Thank you for providing such a useful package!
I have a question regarding the default visualization in cell_type_assignments_by_spot_jitter.pdf. My data comes from Stereo-seq (bin=50), and I noticed that in your method, each spot is decomposed into multiple cells, which initially share the same coordinates. To display all the cells in cell_type_assignments_by_spot_jitter, you introduce jittered coordinates for visualization purposes.
I would like to ask: how can we ensure that the added jittered coordinates won’t affect downstream cell neighborhood analysis or other spatial analyses?
Thank you for your time and support!
Thank you for providing such a useful package!
I have a question regarding the default visualization in cell_type_assignments_by_spot_jitter.pdf. My data comes from Stereo-seq (bin=50), and I noticed that in your method, each spot is decomposed into multiple cells, which initially share the same coordinates. To display all the cells in cell_type_assignments_by_spot_jitter, you introduce jittered coordinates for visualization purposes.
I would like to ask: how can we ensure that the added jittered coordinates won’t affect downstream cell neighborhood analysis or other spatial analyses?
Thank you for your time and support!