Sync to VCBench v1.0.0 latest state (post-provenance-clarification) #2
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| name: tests | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| jobs: | |
| test: | |
| name: pytest (Python ${{ matrix.python-version }}) | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| - name: Install vcbench (editable) + dev deps | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -e ".[dev]" | |
| python -m pip install scikit-learn anndata | |
| - name: Run unit tests | |
| run: python -m pytest tests/unit/ -q --tb=short | |
| - name: Verify reusable APIs import without optional deps | |
| run: | | |
| python -c "from vcbench.protocols import common_label_set" | |
| python -c "from vcbench.probes import spread_error_correlation" | |
| python -c "from vcbench.contamination import ContaminationManifest, validate_manifest" |