tests

Manuscript-alignment number fixes (Dim A/B/C/E) + PDS→PRR figure relabel #7

	name: tests

	on:
	push:
	branches: [main]
	pull_request:
	branches: [main]

	jobs:
	test:
	name: pytest (Python ${{ matrix.python-version }})
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.10", "3.11", "3.12"]

	steps:
	- uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	cache: pip

	- name: Install vcbench (editable) + dev deps
	run: \|
	python -m pip install --upgrade pip
	python -m pip install -e ".[dev]"
	python -m pip install scikit-learn anndata

	- name: Run unit tests
	run: python -m pytest tests/unit/ -q --tb=short

	- name: Verify reusable APIs import without optional deps
	run: \|
	python -c "from vcbench.protocols import common_label_set"
	python -c "from vcbench.probes import spread_error_correlation"
	python -c "from vcbench.contamination import ContaminationManifest, validate_manifest"

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