diff --git a/README.md b/README.md
index 6587b64..ea78bb9 100644
--- a/README.md
+++ b/README.md
@@ -5,7 +5,7 @@
 ![](https://img.shields.io/pypi/v/cirro.svg)
 [![Quality Gate Status](https://sonarcloud.io/api/project_badges/measure?project=CirroBio_Cirro-client&metric=alert_status)](https://sonarcloud.io/summary/new_code?id=CirroBio_Cirro-client)
 
-A Python 3.9+ library for the Cirro platform.
+A Python 3.10+ library for the Cirro platform.
 
 ## Installation
 
diff --git a/poetry.lock b/poetry.lock
index 9f3fa55..4b0512f 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -2,28 +2,28 @@
 
 [[package]]
 name = "aiobotocore"
-version = "2.23.2"
+version = "2.26.0"
 description = "Async client for aws services using botocore and aiohttp"
 optional = false
 python-versions = ">=3.9"
 groups = ["main"]
 files = [
-    {file = "aiobotocore-2.23.2-py3-none-any.whl", hash = "sha256:5ca24feb49be73bd6cd92e82e95aefb0647c07bb85ca57000a0361b9554503d8"},
-    {file = "aiobotocore-2.23.2.tar.gz", hash = "sha256:9c2cbd6e813bb6c60b7f20fc11897976a583c57b0093a87bebfe80a9b08746b2"},
+    {file = "aiobotocore-2.26.0-py3-none-any.whl", hash = "sha256:a793db51c07930513b74ea7a95bd79aaa42f545bdb0f011779646eafa216abec"},
+    {file = "aiobotocore-2.26.0.tar.gz", hash = "sha256:50567feaf8dfe2b653570b4491f5bc8c6e7fb9622479d66442462c021db4fadc"},
 ]
 
 [package.dependencies]
 aiohttp = ">=3.9.2,<4.0.0"
 aioitertools = ">=0.5.1,<1.0.0"
-botocore = ">=1.39.7,<1.39.9"
+botocore = ">=1.41.0,<1.41.6"
 jmespath = ">=0.7.1,<2.0.0"
 multidict = ">=6.0.0,<7.0.0"
 python-dateutil = ">=2.1,<3.0.0"
 wrapt = ">=1.10.10,<2.0.0"
 
 [package.extras]
-awscli = ["awscli (>=1.41.7,<1.41.9)"]
-boto3 = ["boto3 (>=1.39.7,<1.39.9)"]
+awscli = ["awscli (>=1.43.0,<1.43.6)"]
+boto3 = ["boto3 (>=1.41.0,<1.41.6)"]
 httpx = ["httpx (>=0.25.1,<0.29)"]
 
 [[package]]
@@ -40,98 +40,132 @@ files = [
 
 [[package]]
 name = "aiohttp"
-version = "3.12.15"
+version = "3.13.2"
 description = "Async http client/server framework (asyncio)"
 optional = false
 python-versions = ">=3.9"
 groups = ["main"]
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 ]
 
 [package.dependencies]
@@ -145,27 +179,20 @@ propcache = ">=0.2.0"
 yarl = ">=1.17.0,<2.0"
 
 [package.extras]
-speedups = ["Brotli ; platform_python_implementation == \"CPython\"", "aiodns (>=3.3.0)", "brotlicffi ; platform_python_implementation != \"CPython\""]
+speedups = ["Brotli ; platform_python_implementation == \"CPython\"", "aiodns (>=3.3.0)", "backports.zstd ; platform_python_implementation == \"CPython\" and python_version < \"3.14\"", "brotlicffi ; platform_python_implementation != \"CPython\""]
 
 [[package]]
 name = "aioitertools"
-version = "0.12.0"
+version = "0.13.0"
 description = "itertools and builtins for AsyncIO and mixed iterables"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 groups = ["main"]
 files = [
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-    {file = "aioitertools-0.12.0.tar.gz", hash = "sha256:c2a9055b4fbb7705f561b9d86053e8af5d10cc845d22c32008c43490b2d8dd6b"},
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+    {file = "aioitertools-0.13.0.tar.gz", hash = "sha256:620bd241acc0bbb9ec819f1ab215866871b4bbd1f73836a55f799200ee86950c"},
 ]
 
-[package.dependencies]
-typing_extensions = {version = ">=4.0", markers = "python_version < \"3.10\""}
-
-[package.extras]
-dev = ["attribution (==1.8.0)", "black (==24.8.0)", "build (>=1.2)", "coverage (==7.6.1)", "flake8 (==7.1.1)", "flit (==3.9.0)", "mypy (==1.11.2)", "ufmt (==2.7.1)", "usort (==1.0.8.post1)"]
-docs = ["sphinx (==8.0.2)", "sphinx-mdinclude (==0.6.2)"]
-
 [[package]]
 name = "aiosignal"
 version = "1.4.0"
@@ -197,26 +224,23 @@ files = [
 
 [[package]]
 name = "anyio"
-version = "4.9.0"
-description = "High level compatibility layer for multiple asynchronous event loop implementations"
+version = "4.12.0"
+description = "High-level concurrency and networking framework on top of asyncio or Trio"
 optional = false
 python-versions = ">=3.9"
 groups = ["main"]
 files = [
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+    {file = "anyio-4.12.0.tar.gz", hash = "sha256:73c693b567b0c55130c104d0b43a9baf3aa6a31fc6110116509f27bf75e21ec0"},
 ]
 
 [package.dependencies]
 exceptiongroup = {version = ">=1.0.2", markers = "python_version < \"3.11\""}
 idna = ">=2.8"
-sniffio = ">=1.1"
 typing_extensions = {version = ">=4.5", markers = "python_version < \"3.13\""}
 
 [package.extras]
-doc = ["Sphinx (>=8.2,<9.0)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx_rtd_theme"]
-test = ["anyio[trio]", "blockbuster (>=1.5.23)", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "trustme", "truststore (>=0.9.1) ; python_version >= \"3.10\"", "uvloop (>=0.21) ; platform_python_implementation == \"CPython\" and platform_system != \"Windows\" and python_version < \"3.14\""]
-trio = ["trio (>=0.26.1)"]
+trio = ["trio (>=0.31.0) ; python_version < \"3.10\"", "trio (>=0.32.0) ; python_version >= \"3.10\""]
 
 [[package]]
 name = "arcp"
@@ -233,15 +257,15 @@ files = [
 
 [[package]]
 name = "argcomplete"
-version = "3.6.2"
+version = "3.6.3"
 description = "Bash tab completion for argparse"
 optional = true
 python-versions = ">=3.8"
 groups = ["main"]
 markers = "extra == \"wdl\""
 files = [
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+    {file = "argcomplete-3.6.3.tar.gz", hash = "sha256:62e8ed4fd6a45864acc8235409461b72c9a28ee785a2011cc5eb78318786c89c"},
 ]
 
 [package.extras]
@@ -254,7 +278,7 @@ description = "Timeout context manager for asyncio programs"
 optional = false
 python-versions = ">=3.8"
 groups = ["main"]
-markers = "python_version <= \"3.10\""
+markers = "python_version < \"3.11\""
 files = [
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@@ -278,72 +302,64 @@ ubiquerg = ">=0.2.1"
 
 [[package]]
 name = "attrs"
-version = "25.3.0"
+version = "25.4.0"
 description = "Classes Without Boilerplate"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 groups = ["main"]
 files = [
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 ]
 
-[package.extras]
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-
 [[package]]
 name = "awscrt"
-version = "0.27.4"
+version = "0.30.0"
 description = "A common runtime for AWS Python projects"
 optional = false
 python-versions = ">=3.8"
 groups = ["main"]
 files = [
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@@ -351,294 +367,316 @@ dev = ["autopep8 (>=2.3.1)", "build (>=1.2.2)", "h2 (==4.1.0)", "sphinx (>=7.2.6
 
 [[package]]
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+version = "1.41.5"
 description = "The AWS SDK for Python"
 optional = false
 python-versions = ">=3.9"
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-s3transfer = ">=0.13.0,<0.14.0"
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 [package.extras]
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 [package.extras]
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 python-versions = ">=3.9"
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 [package.dependencies]
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-typing-extensions = ">=4.12.2"
+typing-extensions = ">=4.14.0"
 
 [package.extras]
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 cbor2 = ["cbor2 (>=5.4.6)"]
 msgpack = ["msgpack (>=1.0.5)"]
 msgspec = ["msgspec (>=0.19.0) ; implementation_name == \"cpython\""]
-orjson = ["orjson (>=3.10.7) ; implementation_name == \"cpython\""]
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 pyyaml = ["pyyaml (>=6.0)"]
 tomlkit = ["tomlkit (>=0.11.8)"]
 ujson = ["ujson (>=5.10.0)"]
 
 [[package]]
 name = "certifi"
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 description = "Python package for providing Mozilla's CA Bundle."
 optional = false
 python-versions = ">=3.7"
 groups = ["main"]
 files = [
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 [package.dependencies]
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 [[package]]
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 ]
 
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+    {file = "frozenlist-1.8.0.tar.gz", hash = "sha256:3ede829ed8d842f6cd48fc7081d7a41001a56f1f38603f9d49bf3020d59a31ad"},
 ]
 
 [[package]]
 name = "fsspec"
-version = "2025.7.0"
+version = "2025.12.0"
 description = "File-system specification"
 optional = false
-python-versions = ">=3.9"
+python-versions = ">=3.10"
 groups = ["main"]
 files = [
-    {file = "fsspec-2025.7.0-py3-none-any.whl", hash = "sha256:8b012e39f63c7d5f10474de957f3ab793b47b45ae7d39f2fb735f8bbe25c0e21"},
-    {file = "fsspec-2025.7.0.tar.gz", hash = "sha256:786120687ffa54b8283d942929540d8bc5ccfa820deb555a2b5d0ed2b737bf58"},
+    {file = "fsspec-2025.12.0-py3-none-any.whl", hash = "sha256:8bf1fe301b7d8acfa6e8571e3b1c3d158f909666642431cc78a1b7b4dbc5ec5b"},
+    {file = "fsspec-2025.12.0.tar.gz", hash = "sha256:c505de011584597b1060ff778bb664c1bc022e87921b0e4f10cc9c44f9635973"},
 ]
 
 [package.extras]
@@ -1209,7 +1272,6 @@ files = [
 
 [package.dependencies]
 gitdb = ">=4.0.1,<5"
-typing-extensions = {version = ">=3.10.0.2", markers = "python_version < \"3.10\""}
 
 [package.extras]
 doc = ["sphinx (>=7.1.2,<7.2)", "sphinx-autodoc-typehints", "sphinx_rtd_theme"]
@@ -1292,15 +1354,15 @@ pyreadline3 = {version = "*", markers = "sys_platform == \"win32\" and python_ve
 
 [[package]]
 name = "identify"
-version = "2.6.12"
+version = "2.6.15"
 description = "File identification library for Python"
 optional = true
 python-versions = ">=3.9"
 groups = ["main"]
 markers = "extra == \"nextflow\""
 files = [
-    {file = "identify-2.6.12-py2.py3-none-any.whl", hash = "sha256:ad9672d5a72e0d2ff7c5c8809b62dfa60458626352fb0eb7b55e69bdc45334a2"},
-    {file = "identify-2.6.12.tar.gz", hash = "sha256:d8de45749f1efb108badef65ee8386f0f7bb19a7f26185f74de6367bffbaf0e6"},
+    {file = "identify-2.6.15-py2.py3-none-any.whl", hash = "sha256:1181ef7608e00704db228516541eb83a88a9f94433a8c80bb9b5bd54b1d81757"},
+    {file = "identify-2.6.15.tar.gz", hash = "sha256:e4f4864b96c6557ef2a1e1c951771838f4edc9df3a72ec7118b338801b11c7bf"},
 ]
 
 [package.extras]
@@ -1308,14 +1370,14 @@ license = ["ukkonen"]
 
 [[package]]
 name = "idna"
-version = "3.10"
+version = "3.11"
 description = "Internationalized Domain Names in Applications (IDNA)"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
 groups = ["main"]
 files = [
-    {file = "idna-3.10-py3-none-any.whl", hash = "sha256:946d195a0d259cbba61165e88e65941f16e9b36ea6ddb97f00452bae8b1287d3"},
-    {file = "idna-3.10.tar.gz", hash = "sha256:12f65c9b470abda6dc35cf8e63cc574b1c52b11df2c86030af0ac09b01b13ea9"},
+    {file = "idna-3.11-py3-none-any.whl", hash = "sha256:771a87f49d9defaf64091e6e6fe9c18d4833f140bd19464795bc32d966ca37ea"},
+    {file = "idna-3.11.tar.gz", hash = "sha256:795dafcc9c04ed0c1fb032c2aa73654d8e8c5023a7df64a53f39190ada629902"},
 ]
 
 [package.extras]
@@ -1323,15 +1385,15 @@ all = ["flake8 (>=7.1.1)", "mypy (>=1.11.2)", "pytest (>=8.3.2)", "ruff (>=0.6.2
 
 [[package]]
 name = "importlib-metadata"
-version = "8.7.0"
+version = "8.7.1"
 description = "Read metadata from Python packages"
 optional = true
 python-versions = ">=3.9"
 groups = ["main"]
-markers = "python_version < \"3.10\" and (extra == \"nextflow\" or extra == \"wdl\") or extra == \"wdl\""
+markers = "extra == \"wdl\""
 files = [
-    {file = "importlib_metadata-8.7.0-py3-none-any.whl", hash = "sha256:e5dd1551894c77868a30651cef00984d50e1002d06942a7101d34870c5f02afd"},
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+    {file = "importlib_metadata-8.7.1-py3-none-any.whl", hash = "sha256:5a1f80bf1daa489495071efbb095d75a634cf28a8bc299581244063b53176151"},
+    {file = "importlib_metadata-8.7.1.tar.gz", hash = "sha256:49fef1ae6440c182052f407c8d34a68f72efc36db9ca90dc0113398f2fdde8bb"},
 ]
 
 [package.dependencies]
@@ -1341,21 +1403,21 @@ zipp = ">=3.20"
 check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1) ; sys_platform != \"cygwin\""]
 cover = ["pytest-cov"]
 doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-enabler = ["pytest-enabler (>=2.2)"]
+enabler = ["pytest-enabler (>=3.4)"]
 perf = ["ipython"]
-test = ["flufl.flake8", "importlib_resources (>=1.3) ; python_version < \"3.9\"", "jaraco.test (>=5.4)", "packaging", "pyfakefs", "pytest (>=6,!=8.1.*)", "pytest-perf (>=0.9.2)"]
-type = ["pytest-mypy"]
+test = ["flufl.flake8", "jaraco.test (>=5.4)", "packaging", "pyfakefs", "pytest (>=6,!=8.1.*)", "pytest-perf (>=0.9.2)"]
+type = ["mypy (<1.19) ; platform_python_implementation == \"PyPy\"", "pytest-mypy (>=1.0.1)"]
 
 [[package]]
 name = "iniconfig"
-version = "2.1.0"
+version = "2.3.0"
 description = "brain-dead simple config-ini parsing"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.10"
 groups = ["dev"]
 files = [
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+    {file = "iniconfig-2.3.0-py3-none-any.whl", hash = "sha256:f631c04d2c48c52b84d0d0549c99ff3859c98df65b3101406327ecc7d53fbf12"},
+    {file = "iniconfig-2.3.0.tar.gz", hash = "sha256:c76315c77db068650d49c5b56314774a7804df16fee4402c1f19d6d15d8c4730"},
 ]
 
 [[package]]
@@ -1391,14 +1453,14 @@ files = [
 
 [[package]]
 name = "jsonschema"
-version = "4.25.0"
+version = "4.25.1"
 description = "An implementation of JSON Schema validation for Python"
 optional = false
 python-versions = ">=3.9"
 groups = ["main"]
 files = [
-    {file = "jsonschema-4.25.0-py3-none-any.whl", hash = "sha256:24c2e8da302de79c8b9382fee3e76b355e44d2a4364bb207159ce10b517bd716"},
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+    {file = "jsonschema-4.25.1-py3-none-any.whl", hash = "sha256:3fba0169e345c7175110351d456342c364814cfcf3b964ba4587f22915230a63"},
+    {file = "jsonschema-4.25.1.tar.gz", hash = "sha256:e4a9655ce0da0c0b67a085847e00a3a51449e1157f4f75e9fb5aa545e122eb85"},
 ]
 
 [package.dependencies]
@@ -1413,14 +1475,14 @@ format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-
 
 [[package]]
 name = "jsonschema-specifications"
-version = "2025.4.1"
+version = "2025.9.1"
 description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
 optional = false
 python-versions = ">=3.9"
 groups = ["main"]
 files = [
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 ]
 
 [package.dependencies]
@@ -1428,15 +1490,15 @@ referencing = ">=0.31.0"
 
 [[package]]
 name = "lark"
-version = "1.2.2"
+version = "1.3.1"
 description = "a modern parsing library"
 optional = true
 python-versions = ">=3.8"
 groups = ["main"]
 markers = "extra == \"wdl\""
 files = [
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 ]
 
 [package.extras]
@@ -1485,121 +1547,144 @@ setuptools = "*"
 
 [[package]]
 name = "markdown"
-version = "3.8.2"
+version = "3.10"
 description = "Python implementation of John Gruber's Markdown."
 optional = true
-python-versions = ">=3.9"
+python-versions = ">=3.10"
 groups = ["main"]
 markers = "extra == \"nextflow\""
 files = [
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 ]
 
-[package.dependencies]
-importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}
-
 [package.extras]
 docs = ["mdx_gh_links (>=0.2)", "mkdocs (>=1.6)", "mkdocs-gen-files", "mkdocs-literate-nav", "mkdocs-nature (>=0.6)", "mkdocs-section-index", "mkdocstrings[python]"]
 testing = ["coverage", "pyyaml"]
 
 [[package]]
 name = "markdown-it-py"
-version = "3.0.0"
+version = "4.0.0"
 description = "Python port of markdown-it. Markdown parsing, done right!"
 optional = true
-python-versions = ">=3.8"
+python-versions = ">=3.10"
 groups = ["main"]
 markers = "extra == \"nextflow\""
 files = [
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 [package.dependencies]
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-mdit-py-plugins = {version = "*", optional = true, markers = "extra == \"plugins\""}
 mdurl = ">=0.1,<1.0"
 
 [package.extras]
 benchmarking = ["psutil", "pytest", "pytest-benchmark"]
-code-style = ["pre-commit (>=3.0,<4.0)"]
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 linkify = ["linkify-it-py (>=1,<3)"]
-plugins = ["mdit-py-plugins"]
+plugins = ["mdit-py-plugins (>=0.5.0)"]
 profiling = ["gprof2dot"]
-rtd = ["jupyter_sphinx", "mdit-py-plugins", "myst-parser", "pyyaml", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinx_book_theme"]
-testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
+rtd = ["ipykernel", "jupyter_sphinx", "mdit-py-plugins (>=0.5.0)", "myst-parser", "pyyaml", "sphinx", "sphinx-book-theme (>=1.0,<2.0)", "sphinx-copybutton", "sphinx-design"]
+testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions", "requests"]
 
 [[package]]
 name = "markupsafe"
-version = "3.0.2"
+version = "3.0.3"
 description = "Safely add untrusted strings to HTML/XML markup."
 optional = false
 python-versions = ">=3.9"
 groups = ["main", "dev"]
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 markers = {main = "extra == \"nextflow\""}
 
@@ -1617,19 +1702,19 @@ files = [
 
 [[package]]
 name = "mdit-py-plugins"
-version = "0.4.2"
+version = "0.5.0"
 description = "Collection of plugins for markdown-it-py"
 optional = true
-python-versions = ">=3.8"
+python-versions = ">=3.10"
 groups = ["main"]
 markers = "extra == \"nextflow\""
 files = [
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 [package.dependencies]
-markdown-it-py = ">=1.0.0,<4.0.0"
+markdown-it-py = ">=2.0.0,<5.0.0"
 
 [package.extras]
 code-style = ["pre-commit"]
@@ -1651,27 +1736,27 @@ files = [
 
 [[package]]
 name = "miniwdl"
-version = "1.13.0"
+version = "1.13.1"
 description = "Workflow Description Language (WDL) local runner & developer toolkit"
 optional = true
 python-versions = ">=3.8"
 groups = ["main"]
 markers = "extra == \"wdl\""
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 [package.dependencies]
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-bullet = ">=2,<3"
 coloredlogs = ">=15,<16"
 docker = ">=3.4.0"
 importlib-metadata = ">=3.10.1"
-lark = ">=1.2,<2.0"
+lark = ">=1.3,<2.0"
 psutil = ">=5,<8"
 pygtail = ">=0.14,<1.0"
 python-json-logger = ">=2,<4"
+questionary = ">=2,<3"
 regex = ">=2020.4.4"
 "ruamel.yaml" = ">=0.18,<1.0"
 xdg = ">=5.0.0"
@@ -1681,18 +1766,18 @@ dev = ["boto3", "build", "coverage", "graphviz", "mypy", "pytest", "pytest-cov",
 
 [[package]]
 name = "msal"
-version = "1.33.0"
+version = "1.34.0"
 description = "The Microsoft Authentication Library (MSAL) for Python library enables your app to access the Microsoft Cloud by supporting authentication of users with Microsoft Azure Active Directory accounts (AAD) and Microsoft Accounts (MSA) using industry standard OAuth2 and OpenID Connect."
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 groups = ["main"]
 files = [
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 [package.dependencies]
-cryptography = ">=2.5,<48"
+cryptography = ">=2.5,<49"
 PyJWT = {version = ">=1.0.0,<3", extras = ["crypto"]}
 requests = ">=2.0.0,<3"
 
@@ -1719,122 +1804,158 @@ portalocker = ["portalocker (>=1.4,<4)"]
 
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+version = "6.7.0"
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 python-versions = ">=3.9"
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 [package.dependencies]
@@ -1842,15 +1963,15 @@ typing-extensions = {version = ">=4.1.0", markers = "python_version < \"3.11\""}
 
 [[package]]
 name = "nf-core"
-version = "3.3.2"
+version = "3.5.1"
 description = "Helper tools for use with nf-core Nextflow pipelines."
 optional = true
-python-versions = "<4,>=3.9"
+python-versions = "<4,>=3.10"
 groups = ["main"]
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 [package.dependencies]
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 pdiff = "*"
 pillow = "*"
 pre-commit = "*"
-prompt_toolkit = "<=3.0.51"
+prompt_toolkit = "<=3.0.52"
 pydantic = ">=2.2.1"
 PyGithub = "*"
 pyyaml = "*"
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 requests = "*"
 requests_cache = "*"
 rich = ">=13.3.1"
-rich-click = "==1.8.*"
+rich-click = "==1.9.*"
 rocrate = "*"
 "ruamel.yaml" = "*"
 tabulate = "*"
-textual = "3.5.0"
+textual = "6.6.0"
 trogon = "*"
 
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 description = "Node.js virtual environment builder"
 optional = true
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
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 fpx = ["olefile"]
 mic = ["olefile"]
-test-arrow = ["pyarrow"]
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-typing = ["typing-extensions ; python_version < \"3.10\""]
+test-arrow = ["arro3-compute", "arro3-core", "nanoarrow", "pyarrow"]
+tests = ["check-manifest", "coverage (>=7.4.2)", "defusedxml", "markdown2", "olefile", "packaging", "pyroma (>=5)", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "trove-classifiers (>=2024.10.12)"]
 xmp = ["defusedxml"]
 
 [[package]]
 name = "piper"
-version = "0.14.4"
+version = "0.14.5"
 description = "A lightweight python toolkit for gluing together restartable, robust command line pipelines"
 optional = true
 python-versions = "*"
 groups = ["main"]
 markers = "extra == \"nextflow\""
 files = [
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-    {file = "piper-0.14.4.tar.gz", hash = "sha256:70adf4d151cad655e882936ff49eaf77f6f91c1075338cd3af6ad53e12bb5215"},
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 ]
 
 [package.dependencies]
@@ -2442,21 +2502,21 @@ yacman = ">=0.9.3"
 
 [package.extras]
 all = ["matplotlib", "numpy", "pandas", "pipestat (>=0.1.0)", "pysam", "scipy", "seaborn", "yacman"]
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+dev = ["coveralls", "hypothesis (==4.38.0)", "matplotlib", "mock (==2.0.0)", "numpy", "pandas", "pipestat (>=0.1.0)", "pysam", "pytest (>=4.6.9)", "pytest-cov (>=2.8.1)", "pytest-remotedata", "scipy", "seaborn", "yacman"]
 ngstk = ["numpy", "pandas", "pipestat (>=0.1.0)", "pysam", "yacman"]
 plot = ["matplotlib", "scipy", "seaborn"]
 
 [[package]]
 name = "pipestat"
-version = "0.12.1"
+version = "0.12.2"
 description = "A pipeline results reporter"
 optional = true
 python-versions = "*"
 groups = ["main"]
 markers = "extra == \"nextflow\""
 files = [
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 ]
 
 [package.dependencies]
@@ -2475,21 +2535,21 @@ pipestatreader = ["fastapi", "uvicorn"]
 
 [[package]]
 name = "platformdirs"
-version = "4.3.8"
+version = "4.5.1"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`."
 optional = true
-python-versions = ">=3.9"
+python-versions = ">=3.10"
 groups = ["main"]
 markers = "extra == \"nextflow\""
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-type = ["mypy (>=1.14.1)"]
+docs = ["furo (>=2025.9.25)", "proselint (>=0.14)", "sphinx (>=8.2.3)", "sphinx-autodoc-typehints (>=3.2)"]
+test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=8.4.2)", "pytest-cov (>=7)", "pytest-mock (>=3.15.1)"]
+type = ["mypy (>=1.18.2)"]
 
 [[package]]
 name = "pluggy"
@@ -2509,15 +2569,15 @@ testing = ["coverage", "pytest", "pytest-benchmark"]
 
 [[package]]
 name = "pre-commit"
-version = "4.2.0"
+version = "4.5.1"
 description = "A framework for managing and maintaining multi-language pre-commit hooks."
 optional = true
-python-versions = ">=3.9"
+python-versions = ">=3.10"
 groups = ["main"]
 markers = "extra == \"nextflow\""
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 ]
 
 [package.dependencies]
@@ -2529,14 +2589,14 @@ virtualenv = ">=20.10.0"
 
 [[package]]
 name = "prompt-toolkit"
-version = "3.0.51"
+version = "3.0.52"
 description = "Library for building powerful interactive command lines in Python"
 optional = false
 python-versions = ">=3.8"
 groups = ["main"]
 files = [
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 ]
 
 [package.dependencies]
@@ -2544,136 +2604,171 @@ wcwidth = "*"
 
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 python-versions = ">=3.9"
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 name = "pycodestyle"
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+typing-inspection = ">=0.4.2"
 
 [package.extras]
 email = ["email-validator (>=2.0.0)"]
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 [[package]]
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+pytest = ">=7"
 
 [package.extras]
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+testing = ["process-tests", "pytest-xdist", "virtualenv"]
 
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 [[package]]
 name = "questionary"
-version = "2.1.0"
+version = "2.1.1"
 description = "Python library to build pretty command line user prompts ⭐️"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 groups = ["main"]
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 ]
 
 [package.dependencies]
@@ -3239,100 +3390,128 @@ yacman = ">=0.8.3"
 
 [[package]]
 name = "regex"
-version = "2025.7.34"
+version = "2025.11.3"
 description = "Alternative regular expression module, to replace re."
 optional = true
 python-versions = ">=3.9"
 groups = ["main"]
 markers = "extra == \"wdl\""
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 [[package]]
@@ -3355,14 +3534,14 @@ rocrate = "*"
 
 [[package]]
 name = "requests"
-version = "2.32.4"
+version = "2.32.5"
 description = "Python HTTP for Humans."
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 groups = ["main"]
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 ]
 
 [package.dependencies]
@@ -3428,15 +3607,15 @@ yaml = ["pyyaml (>=6.0.1)"]
 
 [[package]]
 name = "rich"
-version = "14.1.0"
+version = "14.2.0"
 description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
 optional = true
 python-versions = ">=3.8.0"
 groups = ["main"]
 markers = "extra == \"nextflow\""
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 [package.dependencies]
@@ -3448,37 +3627,38 @@ jupyter = ["ipywidgets (>=7.5.1,<9)"]
 
 [[package]]
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-version = "1.8.9"
+version = "1.9.5"
 description = "Format click help output nicely with rich"
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 ]
 
 [package.dependencies]
-click = ">=7"
-rich = ">=10.7"
-typing_extensions = ">=4"
+click = ">=8"
+colorama = {version = "*", markers = "platform_system == \"Windows\""}
+rich = ">=12"
+typing-extensions = {version = ">=4", markers = "python_version < \"3.11\""}
 
 [package.extras]
-dev = ["mypy", "packaging", "pre-commit", "pytest", "pytest-cov", "rich-codex", "ruff", "types-setuptools"]
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 [[package]]
 name = "rocrate"
-version = "0.14.0"
+version = "0.14.2"
 description = "RO-Crate metadata generator/parser"
 optional = true
 python-versions = ">=3.9"
 groups = ["main"]
 markers = "extra == \"nextflow\""
 files = [
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 ]
 
 [package.dependencies]
@@ -3493,173 +3673,144 @@ ga2cwl = ["galaxy2cwl"]
 
 [[package]]
 name = "rpds-py"
-version = "0.26.0"
+version = "0.30.0"
 description = "Python bindings to Rust's persistent data structures (rpds)"
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 [package.extras]
 docs = ["mercurial (>5.7)", "ryd"]
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-
-[package.extras]
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-boto3 = ["aiobotocore[boto3] (>=2.5.4,<3.0.0)"]
+fsspec = "2025.12.0"
 
 [[package]]
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+version = "0.15.0"
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 ]
 
 [package.dependencies]
@@ -3851,67 +4013,79 @@ widechars = ["wcwidth"]
 
 [[package]]
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 ]
 
 [package.dependencies]
-markdown-it-py = {version = ">=2.1.0", extras = ["linkify", "plugins"]}
+markdown-it-py = {version = ">=2.1.0", extras = ["linkify"]}
+mdit-py-plugins = "*"
 platformdirs = ">=3.6.0,<5"
-rich = ">=13.3.3"
+pygments = ">=2.19.2,<3.0.0"
+rich = ">=14.2.0"
 typing-extensions = ">=4.4.0,<5.0.0"
 
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 [[package]]
@@ -3958,15 +4132,15 @@ typer = ["typer (>=0.9.0)"]
 
 [[package]]
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 [package.dependencies]
@@ -3977,28 +4151,28 @@ typing-extensions = ">=3.7.4.3"
 
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-markers = {main = "python_version <= \"3.12\" or extra == \"nextflow\"", dev = "python_version <= \"3.10\""}
+markers = {main = "python_version < \"3.13\" or extra == \"nextflow\"", dev = "python_version < \"3.11\""}
 
 [[package]]
 name = "typing-inspection"
-version = "0.4.1"
+version = "0.4.2"
 description = "Runtime typing introspection tools"
 optional = true
 python-versions = ">=3.9"
 groups = ["main"]
 markers = "extra == \"nextflow\""
 files = [
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 [package.dependencies]
@@ -4006,27 +4180,27 @@ typing-extensions = ">=4.12.0"
 
 [[package]]
 name = "tzdata"
-version = "2025.2"
+version = "2025.3"
 description = "Provider of IANA time zone data"
 optional = false
 python-versions = ">=2"
 groups = ["main"]
 files = [
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 ]
 
 [[package]]
 name = "ubiquerg"
-version = "0.8.1"
+version = "0.8.2"
 description = "Various utility functions"
 optional = true
-python-versions = "*"
+python-versions = ">=3.9"
 groups = ["main"]
 markers = "extra == \"nextflow\""
 files = [
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 ]
 
 [[package]]
@@ -4066,58 +4240,40 @@ dev = ["mypy", "pre-commit", "pytest", "pytest-cov", "pytest-socket", "ruff"]
 
 [[package]]
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-description = "HTTP library with thread-safe connection pooling, file post, and more."
-optional = false
-python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
-groups = ["main"]
-markers = "python_version < \"3.10\""
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-socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
-
-[[package]]
-name = "urllib3"
-version = "2.5.0"
+version = "2.6.2"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 optional = false
 python-versions = ">=3.9"
 groups = ["main"]
-markers = "python_version >= \"3.10\""
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 h2 = ["h2 (>=4,<5)"]
 socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"]
-zstd = ["zstandard (>=0.18.0)"]
+zstd = ["backports-zstd (>=1.0.0) ; python_version < \"3.14\""]
 
 [[package]]
 name = "virtualenv"
-version = "20.32.0"
+version = "20.35.4"
 description = "Virtual Python Environment builder"
 optional = true
 python-versions = ">=3.8"
 groups = ["main"]
 markers = "extra == \"nextflow\""
 files = [
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 [package.dependencies]
 distlib = ">=0.3.7,<1"
 filelock = ">=3.12.2,<4"
 platformdirs = ">=3.9.1,<5"
+typing-extensions = {version = ">=4.13.2", markers = "python_version < \"3.11\""}
 
 [package.extras]
 docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.2,!=7.3)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"]
@@ -4125,103 +4281,105 @@ test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess
 
 [[package]]
 name = "wcwidth"
-version = "0.2.13"
+version = "0.2.14"
 description = "Measures the displayed width of unicode strings in a terminal"
 optional = false
-python-versions = "*"
+python-versions = ">=3.6"
 groups = ["main"]
 files = [
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 ]
 
 [[package]]
 name = "wrapt"
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 optional = false
 python-versions = ">=3.8"
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+    {file = "yarl-1.22.0-py3-none-any.whl", hash = "sha256:1380560bdba02b6b6c90de54133c81c9f2a453dee9912fe58c1dcced1edb7cff"},
+    {file = "yarl-1.22.0.tar.gz", hash = "sha256:bebf8557577d4401ba8bd9ff33906f1376c877aa78d1fe216ad01b4d6745af71"},
 ]
 
 [package.dependencies]
@@ -4383,7 +4567,7 @@ description = "Backport of pathlib-compatible object wrapper for zip files"
 optional = true
 python-versions = ">=3.9"
 groups = ["main"]
-markers = "python_version < \"3.10\" and (extra == \"nextflow\" or extra == \"wdl\") or extra == \"wdl\""
+markers = "extra == \"wdl\""
 files = [
     {file = "zipp-3.23.0-py3-none-any.whl", hash = "sha256:071652d6115ed432f5ce1d34c336c0adfd6a884660d1e9712a256d3d3bd4b14e"},
     {file = "zipp-3.23.0.tar.gz", hash = "sha256:a07157588a12518c9d4034df3fbbee09c814741a33ff63c05fa29d26a2404166"},
@@ -4404,5 +4588,5 @@ wdl = ["miniwdl"]
 
 [metadata]
 lock-version = "2.1"
-python-versions = ">3.9.1,<4.0"
-content-hash = "41ff8f2b584f3599818416dab5de981f965f847a238bdd5951ffe1175ffa8e11"
+python-versions = ">3.10.0,<4.0"
+content-hash = "059bb5f827b77797b8710b8536c90ec1e8910ceb87e027dce5ca6bcee4f332c4"
diff --git a/pyproject.toml b/pyproject.toml
index 2892b49..58b3713 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "cirro"
-version = "1.9.3"
+version = "1.9.4"
 description = "CLI tool and SDK for interacting with the Cirro platform"
 authors = ["Cirro Bio <support@cirro.bio>"]
 license = "MIT"
@@ -9,24 +9,24 @@ repository = "https://github.com/CirroBio/Cirro-SDK-Python"
 packages = [{include = "cirro"}]
 
 [tool.poetry.dependencies]
-python = ">3.9.1,<4.0"
+python = ">3.10.0,<4.0"
 attrs = ">=21.3.0"
 cirro_api_client = "1.2.2"
 click = "^8.1.3"
-boto3 = "~=1.38"
+boto3 = "~=1.41"
 questionary = "^2.0.1"
 requests = "^2.32.0"
 tqdm = "^4.62.3"
 jsonschema = "^4.21.1"
 pandas = "^2.2.0"
-s3fs = "2025.7.0"
+s3fs = "2025.12.0"
 pyjwt = "^2.10.0"
 msal-extensions = "^1.0.0"
 requests-aws4auth = {version="1.3.1", optional=true}
 miniwdl = {version="^1.13.0", optional=true}
 referencing = "^0.36.2"
 nf-core = {version = "^3.3.2", optional=true}
-awscrt = "==0.27.4"
+awscrt = "==0.30.0"
 
 [tool.poetry.group.dev.dependencies]
 pytest = "^7.1.3"