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<div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span> </div>
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span><span class="preprocessor">#include <iostream></span></div>
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span><span class="preprocessor">#include <sstream></span></div>
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span> </div>
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span><span class="preprocessor">#include "DGtal/base/Common.h"</span></div>
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span><span class="preprocessor">#include "DGtal/base/BasicFunctors.h"</span></div>
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span><span class="preprocessor">#include "DGtal/helpers/StdDefs.h"</span></div>
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span><span class="preprocessor">#include "DGtal/io/readers/GenericReader.h"</span></div>
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span><span class="preprocessor">#include "DGtal/io/viewers/PolyscopeViewer.h"</span></div>
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span><span class="preprocessor">#include "DGtal/io/readers/PointListReader.h"</span></div>
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span><span class="preprocessor">#include "DGtal/io/readers/MeshReader.h"</span></div>
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span> </div>
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span><span class="preprocessor">#include "DGtal/io/Color.h"</span></div>
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span><span class="preprocessor">#include "DGtal/io/colormaps/GradientColorMap.h"</span></div>
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span><span class="preprocessor">#include "DGtal/images/ImageSelector.h"</span></div>
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span> </div>
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span><span class="preprocessor">#include "CLI11.hpp"</span></div>
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> </div>
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span><span class="keyword">using namespace </span>std;</div>
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span><span class="keyword">using namespace </span><a class="code hl_namespace" href="namespaceDGtal.html">DGtal</a>;</div>
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span><span class="keyword">using namespace </span>Z3i;</div>
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> </div>
<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span> </div>
<div class="line"><a id="l00104" name="l00104"></a><span class="lineno"> 104</span><span class="keyword">typedef</span> PolyscopeViewer<> Viewer;</div>
<div class="line"><a id="l00105" name="l00105"></a><span class="lineno"> 105</span> </div>
<div class="line"><a id="l00106" name="l00106"></a><span class="lineno"> 106</span><span class="keyword">template</span> <<span class="keyword">typename</span> TImage></div>
<div class="line"><a id="l00107" name="l00107"></a><span class="lineno"> 107</span><span class="keywordtype">void</span></div>
<div class="line"><a id="l00108" name="l00108"></a><span class="lineno"> 108</span>processDisplay(PolyscopeViewer<> &viewer, TImage &image,</div>
<div class="line"><a id="l00109" name="l00109"></a><span class="lineno"> 109</span> <span class="keyword">const</span> <span class="keyword">typename</span> TImage::Value &thresholdMin,</div>
<div class="line"><a id="l00110" name="l00110"></a><span class="lineno"> 110</span> <span class="keyword">const</span> <span class="keyword">typename</span> TImage::Value &thresholdMax,</div>
<div class="line"><a id="l00111" name="l00111"></a><span class="lineno"> 111</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> numDisplayedMax)</div>
<div class="line"><a id="l00112" name="l00112"></a><span class="lineno"> 112</span>{</div>
<div class="line"><a id="l00113" name="l00113"></a><span class="lineno"> 113</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> numDisplayed = 0;</div>
<div class="line"><a id="l00114" name="l00114"></a><span class="lineno"> 114</span> Domain domain = image.domain();</div>
<div class="line"><a id="l00115" name="l00115"></a><span class="lineno"> 115</span> <span class="keywordflow">for</span>(Domain::ConstIterator it = domain.begin(), itend=domain.end(); it!=itend; ++it) {</div>
<div class="line"><a id="l00116" name="l00116"></a><span class="lineno"> 116</span> <span class="keyword">typename</span> TImage::Value val= image( (*it) );</div>
<div class="line"><a id="l00117" name="l00117"></a><span class="lineno"> 117</span> <span class="keywordflow">if</span>(numDisplayed > numDisplayedMax)</div>
<div class="line"><a id="l00118" name="l00118"></a><span class="lineno"> 118</span> <span class="keywordflow">break</span>;</div>
<div class="line"><a id="l00119" name="l00119"></a><span class="lineno"> 119</span> </div>
<div class="line"><a id="l00120" name="l00120"></a><span class="lineno"> 120</span> <span class="keywordflow">if</span>(val<=thresholdMax && val >=thresholdMin)</div>
<div class="line"><a id="l00121" name="l00121"></a><span class="lineno"> 121</span> {</div>
<div class="line"><a id="l00122" name="l00122"></a><span class="lineno"> 122</span> viewer << WithQuantity(*it, <span class="stringliteral">"value"</span>, val);</div>
<div class="line"><a id="l00123" name="l00123"></a><span class="lineno"> 123</span> numDisplayed++;</div>
<div class="line"><a id="l00124" name="l00124"></a><span class="lineno"> 124</span> }</div>
<div class="line"><a id="l00125" name="l00125"></a><span class="lineno"> 125</span> }</div>
<div class="line"><a id="l00126" name="l00126"></a><span class="lineno"> 126</span>}</div>
<div class="line"><a id="l00127" name="l00127"></a><span class="lineno"> 127</span> </div>
<div class="line"><a id="l00128" name="l00128"></a><span class="lineno"> 128</span> </div>
<div class="line"><a id="l00129" name="l00129"></a><span class="lineno"> 129</span> </div>
<div class="line"><a id="l00130" name="l00130"></a><span class="lineno"> 130</span><span class="comment">// Variable globale pour activer/désactiver l'UI</span></div>
<div class="line"><a id="l00131" name="l00131"></a><span class="lineno"> 131</span><span class="keywordtype">bool</span> show_ui = <span class="keyword">false</span>;</div>
<div class="line"><a id="l00132" name="l00132"></a><span class="lineno"> 132</span> </div>
<div class="line"><a id="l00133" name="l00133"></a><span class="lineno"> 133</span><span class="keywordtype">void</span> myCallback() {</div>
<div class="line"><a id="l00134" name="l00134"></a><span class="lineno"> 134</span> ImGuiIO& io = ImGui::GetIO();</div>
<div class="line"><a id="l00135" name="l00135"></a><span class="lineno"> 135</span> </div>
<div class="line"><a id="l00136" name="l00136"></a><span class="lineno"> 136</span> </div>
<div class="line"><a id="l00137" name="l00137"></a><span class="lineno"> 137</span> <span class="comment">// Si la touche W est enfoncée ce frame</span></div>
<div class="line"><a id="l00138" name="l00138"></a><span class="lineno"> 138</span> <span class="keywordflow">if</span> (ImGui::IsKeyPressed(ImGuiKey_W)) {</div>
<div class="line"><a id="l00139" name="l00139"></a><span class="lineno"> 139</span> show_ui = !show_ui;</div>
<div class="line"><a id="l00140" name="l00140"></a><span class="lineno"> 140</span> polyscope::options::buildGui = show_ui;</div>
<div class="line"><a id="l00141" name="l00141"></a><span class="lineno"> 141</span> }</div>
<div class="line"><a id="l00142" name="l00142"></a><span class="lineno"> 142</span> </div>
<div class="line"><a id="l00143" name="l00143"></a><span class="lineno"> 143</span> </div>
<div class="line"><a id="l00144" name="l00144"></a><span class="lineno"> 144</span>}</div>
<div class="line"><a id="l00145" name="l00145"></a><span class="lineno"> 145</span> </div>
<div class="line"><a id="l00146" name="l00146"></a><span class="lineno"> 146</span> </div>
<div class="line"><a id="l00147" name="l00147"></a><span class="lineno"> 147</span> </div>
<div class="line"><a id="l00148" name="l00148"></a><span class="lineno"> 148</span><span class="keywordtype">int</span> main( <span class="keywordtype">int</span> argc, <span class="keywordtype">char</span>** argv )</div>
<div class="line"><a id="l00149" name="l00149"></a><span class="lineno"> 149</span>{</div>
<div class="line"><a id="l00150" name="l00150"></a><span class="lineno"> 150</span> <span class="comment">// parse command line using CLI ----------------------------------------------</span></div>
<div class="line"><a id="l00151" name="l00151"></a><span class="lineno"> 151</span> CLI::App app;</div>
<div class="line"><a id="l00152" name="l00152"></a><span class="lineno"> 152</span> app.description(<span class="stringliteral">"Display volume file as a voxel set by using QGLviewer. \n Example: \n \t 3dVolViewer $DGtal/examples/samples/lobster.vol -m 60 -t 10"</span>);</div>
<div class="line"><a id="l00153" name="l00153"></a><span class="lineno"> 153</span> std::string inputFileName;</div>
<div class="line"><a id="l00154" name="l00154"></a><span class="lineno"> 154</span> DGtal::int64_t rescaleInputMin {0};</div>
<div class="line"><a id="l00155" name="l00155"></a><span class="lineno"> 155</span> DGtal::int64_t rescaleInputMax {255};</div>
<div class="line"><a id="l00156" name="l00156"></a><span class="lineno"> 156</span> <span class="keywordtype">double</span> thresholdMin {0};</div>
<div class="line"><a id="l00157" name="l00157"></a><span class="lineno"> 157</span> <span class="keywordtype">double</span> thresholdMax {255};</div>
<div class="line"><a id="l00158" name="l00158"></a><span class="lineno"> 158</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> transparency {255};</div>
<div class="line"><a id="l00159" name="l00159"></a><span class="lineno"> 159</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> numDisplayedMax {500000};</div>
<div class="line"><a id="l00160" name="l00160"></a><span class="lineno"> 160</span> std::string displayMesh;</div>
<div class="line"><a id="l00161" name="l00161"></a><span class="lineno"> 161</span> std::string snapShotFile;</div>
<div class="line"><a id="l00162" name="l00162"></a><span class="lineno"> 162</span> std::vector<unsigned int> colorMesh;</div>
<div class="line"><a id="l00163" name="l00163"></a><span class="lineno"> 163</span> std::vector<unsigned int > customBGColor;</div>
<div class="line"><a id="l00164" name="l00164"></a><span class="lineno"> 164</span> </div>
<div class="line"><a id="l00165" name="l00165"></a><span class="lineno"> 165</span> <span class="keywordtype">string</span> inputType {<span class="stringliteral">""</span>};</div>
<div class="line"><a id="l00166" name="l00166"></a><span class="lineno"> 166</span> <span class="keywordtype">bool</span> interactiveDisplayVoxCoords {<span class="keyword">false</span>};</div>
<div class="line"><a id="l00167" name="l00167"></a><span class="lineno"> 167</span> <span class="keywordtype">bool</span> transIntensity {<span class="keyword">false</span>};</div>
<div class="line"><a id="l00168" name="l00168"></a><span class="lineno"> 168</span> <span class="keywordtype">bool</span> transIntensitySq {<span class="keyword">false</span>};</div>
<div class="line"><a id="l00169" name="l00169"></a><span class="lineno"> 169</span> </div>
<div class="line"><a id="l00170" name="l00170"></a><span class="lineno"> 170</span> app.add_option(<span class="stringliteral">"-i,--input,1"</span>, inputFileName, <span class="stringliteral">"vol file (.vol, .longvol .p3d, .pgm3d and if DGTAL_WITH_ITK is selected: dicom, dcm, mha, mhd). For longvol, dicom, dcm, mha or mhd formats, the input values are linearly scaled between 0 and 255."</span> )</div>
<div class="line"><a id="l00171" name="l00171"></a><span class="lineno"> 171</span> ->required()</div>
<div class="line"><a id="l00172" name="l00172"></a><span class="lineno"> 172</span> ->check(CLI::ExistingFile);</div>
<div class="line"><a id="l00173" name="l00173"></a><span class="lineno"> 173</span><span class="preprocessor">#ifdef DGTAL_WITH_ITK</span></div>
<div class="line"><a id="l00174" name="l00174"></a><span class="lineno"> 174</span> app.add_option(<span class="stringliteral">"--inputType"</span>, inputType, <span class="stringliteral">"to specify the input image type (int or double)."</span>)</div>
<div class="line"><a id="l00175" name="l00175"></a><span class="lineno"> 175</span> -> check(CLI::IsMember({<span class="stringliteral">"int"</span>, <span class="stringliteral">"double"</span>}));</div>
<div class="line"><a id="l00176" name="l00176"></a><span class="lineno"> 176</span><span class="preprocessor">#endif </span></div>
<div class="line"><a id="l00177" name="l00177"></a><span class="lineno"> 177</span> app.add_option(<span class="stringliteral">"--thresholdMin,-m"</span>, thresholdMin, <span class="stringliteral">"threshold min (excluded) to define binary shape."</span>);</div>
<div class="line"><a id="l00178" name="l00178"></a><span class="lineno"> 178</span> app.add_option(<span class="stringliteral">"--thresholdMax,-M"</span>, thresholdMax, <span class="stringliteral">"threshold max (included) to define binary shape."</span>);</div>
<div class="line"><a id="l00179" name="l00179"></a><span class="lineno"> 179</span> app.add_option(<span class="stringliteral">"--rescaleInputMin"</span>, rescaleInputMin, <span class="stringliteral">"min value used to rescale the input intensity (to avoid basic cast into 8 bits image)."</span>);</div>
<div class="line"><a id="l00180" name="l00180"></a><span class="lineno"> 180</span> app.add_option(<span class="stringliteral">"--rescaleInputMax"</span>, rescaleInputMax, <span class="stringliteral">"max value used to rescale the input intensity (to avoid basic cast into 8 bits image)."</span>);</div>
<div class="line"><a id="l00181" name="l00181"></a><span class="lineno"> 181</span> app.add_option(<span class="stringliteral">"--numMaxVoxel,-n"</span>, numDisplayedMax, <span class="stringliteral">"set the maximal voxel number to be displayed."</span>);</div>
<div class="line"><a id="l00182" name="l00182"></a><span class="lineno"> 182</span> app.add_option(<span class="stringliteral">"--displayMesh"</span>, displayMesh, <span class="stringliteral">"display a Mesh given in OFF or OFS format."</span>);</div>
<div class="line"><a id="l00183" name="l00183"></a><span class="lineno"> 183</span> app.add_option(<span class="stringliteral">"--colorMesh"</span>, colorMesh, <span class="stringliteral">"set the color of Mesh (given from displayMesh option) : r g b a "</span>)</div>
<div class="line"><a id="l00184" name="l00184"></a><span class="lineno"> 184</span> ->expected(4);</div>
<div class="line"><a id="l00185" name="l00185"></a><span class="lineno"> 185</span> app.add_option(<span class="stringliteral">"--doSnapShotAndExit,-d"</span>, snapShotFile, <span class="stringliteral">"save display snapshot into file. Notes that the camera setting is set by default according the last saved configuration (use SHIFT+Key_M to save current camera setting in the Viewer3D). If the camera setting was not saved it will use the default camera setting."</span>);</div>
<div class="line"><a id="l00186" name="l00186"></a><span class="lineno"> 186</span> app.add_option(<span class="stringliteral">"--customBGColor,-b"</span>, customBGColor, <span class="stringliteral">"set the R, G, B, A components of the colors of the sdp view"</span>)</div>
<div class="line"><a id="l00187" name="l00187"></a><span class="lineno"> 187</span> ->expected(3);</div>
<div class="line"><a id="l00188" name="l00188"></a><span class="lineno"> 188</span> app.add_option(<span class="stringliteral">"--transparency,-t"</span>, transparency, <span class="stringliteral">"change the defaukt transparency"</span>);</div>
<div class="line"><a id="l00189" name="l00189"></a><span class="lineno"> 189</span> app.add_flag(<span class="stringliteral">"--transIntensity"</span>,transIntensity , <span class="stringliteral">"Used vocel intensity to define transparency valeue"</span>);</div>
<div class="line"><a id="l00190" name="l00190"></a><span class="lineno"> 190</span> app.add_flag(<span class="stringliteral">"--transIntensitySq"</span>,transIntensitySq , <span class="stringliteral">"Used squared vocel intensity to define transparency valeue"</span>);</div>
<div class="line"><a id="l00191" name="l00191"></a><span class="lineno"> 191</span> app.add_flag(<span class="stringliteral">"--interactiveDisplayVoxCoords,-c"</span>, interactiveDisplayVoxCoords, <span class="stringliteral">" by using this option the coordinates can be displayed after selection (shift+left click on voxel)."</span>);</div>
<div class="line"><a id="l00192" name="l00192"></a><span class="lineno"> 192</span> app.get_formatter()->column_width(40);</div>
<div class="line"><a id="l00193" name="l00193"></a><span class="lineno"> 193</span> CLI11_PARSE(app, argc, argv);</div>
<div class="line"><a id="l00194" name="l00194"></a><span class="lineno"> 194</span> <span class="comment">// END parse command line using CLI ----------------------------------------------</span></div>
<div class="line"><a id="l00195" name="l00195"></a><span class="lineno"> 195</span> stringstream s;</div>
<div class="line"><a id="l00196" name="l00196"></a><span class="lineno"> 196</span> s << <span class="stringliteral">"3dVolViewer - DGtalTools: "</span>;</div>
<div class="line"><a id="l00197" name="l00197"></a><span class="lineno"> 197</span> <span class="keywordtype">string</span> name = inputFileName.substr(inputFileName.find_last_of(<span class="stringliteral">"/"</span>)+1,inputFileName.size()) ;</div>
<div class="line"><a id="l00198" name="l00198"></a><span class="lineno"> 198</span> s << <span class="stringliteral">" "</span> << name << <span class="stringliteral">" (W key to display settings)"</span>;</div>
<div class="line"><a id="l00199" name="l00199"></a><span class="lineno"> 199</span> polyscope::options::programName = s.str();</div>
<div class="line"><a id="l00200" name="l00200"></a><span class="lineno"> 200</span> polyscope::options::buildGui=<span class="keyword">false</span>;</div>
<div class="line"><a id="l00201" name="l00201"></a><span class="lineno"> 201</span> polyscope::options::groundPlaneMode = polyscope::GroundPlaneMode::None;</div>
<div class="line"><a id="l00202" name="l00202"></a><span class="lineno"> 202</span> polyscope::view::setNavigateStyle(polyscope::NavigateStyle::Free);</div>
<div class="line"><a id="l00203" name="l00203"></a><span class="lineno"> 203</span> </div>
<div class="line"><a id="l00204" name="l00204"></a><span class="lineno"> 204</span> Viewer viewer;</div>
<div class="line"><a id="l00205" name="l00205"></a><span class="lineno"> 205</span> viewer.allowReuseList = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00206" name="l00206"></a><span class="lineno"> 206</span> </div>
<div class="line"><a id="l00207" name="l00207"></a><span class="lineno"> 207</span> <span class="keyword">typedef</span> ImageContainerBySTLVector < Z3i::Domain, double > Image3D_D;</div>
<div class="line"><a id="l00208" name="l00208"></a><span class="lineno"> 208</span> <span class="keyword">typedef</span> ImageContainerBySTLVector < Z3i::Domain, int > Image3D_I;</div>
<div class="line"><a id="l00209" name="l00209"></a><span class="lineno"> 209</span> <span class="keyword">typedef</span> ImageSelector<Domain, unsigned char>::Type Image;</div>
<div class="line"><a id="l00210" name="l00210"></a><span class="lineno"> 210</span> </div>
<div class="line"><a id="l00211" name="l00211"></a><span class="lineno"> 211</span> <span class="keywordtype">string</span> extension = inputFileName.substr(inputFileName.find_last_of(<span class="stringliteral">"."</span>) + 1);</div>
<div class="line"><a id="l00212" name="l00212"></a><span class="lineno"> 212</span> </div>
<div class="line"><a id="l00213" name="l00213"></a><span class="lineno"> 213</span> std::vector<double> vectValD;</div>
<div class="line"><a id="l00214" name="l00214"></a><span class="lineno"> 214</span> std::vector<int> vectValI;</div>
<div class="line"><a id="l00215" name="l00215"></a><span class="lineno"> 215</span> std::vector<unsigned char> vectValUC;</div>
<div class="line"><a id="l00216" name="l00216"></a><span class="lineno"> 216</span> <span class="comment">// Image of different types are pre constructed here else it will be deleted after the type selection</span></div>
<div class="line"><a id="l00217" name="l00217"></a><span class="lineno"> 217</span> <span class="comment">// (and it is used in display callback)</span></div>
<div class="line"><a id="l00218" name="l00218"></a><span class="lineno"> 218</span> Z3i::Domain d;</div>
<div class="line"><a id="l00219" name="l00219"></a><span class="lineno"> 219</span> Image3D_D imageD = Image3D_D(d);</div>
<div class="line"><a id="l00220" name="l00220"></a><span class="lineno"> 220</span> Image3D_I imageI = Image3D_I(d);</div>
<div class="line"><a id="l00221" name="l00221"></a><span class="lineno"> 221</span> Image image = Image(d);</div>
<div class="line"><a id="l00222" name="l00222"></a><span class="lineno"> 222</span> </div>
<div class="line"><a id="l00223" name="l00223"></a><span class="lineno"> 223</span> <span class="keywordflow">if</span>(extension != <span class="stringliteral">"sdp"</span>)</div>
<div class="line"><a id="l00224" name="l00224"></a><span class="lineno"> 224</span> {</div>
<div class="line"><a id="l00225" name="l00225"></a><span class="lineno"> 225</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> numDisplayed=0;</div>
<div class="line"><a id="l00226" name="l00226"></a><span class="lineno"> 226</span> </div>
<div class="line"><a id="l00227" name="l00227"></a><span class="lineno"> 227</span><span class="preprocessor">#ifdef DGTAL_WITH_ITK</span></div>
<div class="line"><a id="l00228" name="l00228"></a><span class="lineno"> 228</span> <span class="keywordflow">if</span> (inputType==<span class="stringliteral">"double"</span>)</div>
<div class="line"><a id="l00229" name="l00229"></a><span class="lineno"> 229</span> {</div>
<div class="line"><a id="l00230" name="l00230"></a><span class="lineno"> 230</span> imageD = DGtal::GenericReader<Image3D_D>::import(inputFileName);</div>
<div class="line"><a id="l00231" name="l00231"></a><span class="lineno"> 231</span> trace.info() << <span class="stringliteral">"[done]"</span><< std::endl;</div>
<div class="line"><a id="l00232" name="l00232"></a><span class="lineno"> 232</span> trace.info() << <span class="stringliteral">"Image loaded: D "</span><<imageD<< std::endl;</div>
<div class="line"><a id="l00233" name="l00233"></a><span class="lineno"> 233</span> processDisplay(viewer, imageD, thresholdMin, thresholdMax, numDisplayedMax);</div>
<div class="line"><a id="l00234" name="l00234"></a><span class="lineno"> 234</span> }</div>
<div class="line"><a id="l00235" name="l00235"></a><span class="lineno"> 235</span> <span class="keywordflow">else</span> <span class="keywordflow">if</span> (inputType==<span class="stringliteral">"int"</span>)</div>
<div class="line"><a id="l00236" name="l00236"></a><span class="lineno"> 236</span> {</div>
<div class="line"><a id="l00237" name="l00237"></a><span class="lineno"> 237</span> imageI= DGtal::GenericReader<Image3D_I>::import(inputFileName);</div>
<div class="line"><a id="l00238" name="l00238"></a><span class="lineno"> 238</span> trace.info() << <span class="stringliteral">"Image loaded: "</span><<image<< std::endl;</div>
<div class="line"><a id="l00239" name="l00239"></a><span class="lineno"> 239</span> processDisplay(viewer, imageI, (<span class="keywordtype">int</span>)thresholdMin, (<span class="keywordtype">int</span>)thresholdMax, numDisplayedMax);</div>
<div class="line"><a id="l00240" name="l00240"></a><span class="lineno"> 240</span> } <span class="keywordflow">else</span> {</div>
<div class="line"><a id="l00241" name="l00241"></a><span class="lineno"> 241</span> <span class="keyword">typedef</span> DGtal::functors::Rescaling<DGtal::int64_t ,unsigned char > RescalFCT;</div>
<div class="line"><a id="l00242" name="l00242"></a><span class="lineno"> 242</span> image = GenericReader< Image >::importWithValueFunctor( inputFileName,RescalFCT(rescaleInputMin,</div>
<div class="line"><a id="l00243" name="l00243"></a><span class="lineno"> 243</span> rescaleInputMax,</div>
<div class="line"><a id="l00244" name="l00244"></a><span class="lineno"> 244</span> 0, 255) );</div>
<div class="line"><a id="l00245" name="l00245"></a><span class="lineno"> 245</span> trace.info() << <span class="stringliteral">"Image loaded: "</span><<image<< std::endl;</div>
<div class="line"><a id="l00246" name="l00246"></a><span class="lineno"> 246</span> processDisplay(viewer, image, thresholdMin, thresholdMax, numDisplayedMax);</div>
<div class="line"><a id="l00247" name="l00247"></a><span class="lineno"> 247</span> }</div>
<div class="line"><a id="l00248" name="l00248"></a><span class="lineno"> 248</span><span class="preprocessor">#else</span></div>
<div class="line"><a id="l00249" name="l00249"></a><span class="lineno"> 249</span> <span class="keyword">typedef</span> DGtal::functors::Rescaling<DGtal::int64_t ,unsigned char > RescalFCT;</div>
<div class="line"><a id="l00250" name="l00250"></a><span class="lineno"> 250</span> image = GenericReader< Image >::importWithValueFunctor( inputFileName,RescalFCT(rescaleInputMin,</div>
<div class="line"><a id="l00251" name="l00251"></a><span class="lineno"> 251</span> rescaleInputMax,</div>
<div class="line"><a id="l00252" name="l00252"></a><span class="lineno"> 252</span> 0, 255) );</div>
<div class="line"><a id="l00253" name="l00253"></a><span class="lineno"> 253</span> trace.info() << <span class="stringliteral">"Image loaded: "</span><<image<< std::endl;</div>
<div class="line"><a id="l00254" name="l00254"></a><span class="lineno"> 254</span> processDisplay(viewer, image, thresholdMin, thresholdMax, numDisplayedMax);</div>
<div class="line"><a id="l00255" name="l00255"></a><span class="lineno"> 255</span><span class="preprocessor">#endif</span></div>
<div class="line"><a id="l00256" name="l00256"></a><span class="lineno"> 256</span> }</div>
<div class="line"><a id="l00257" name="l00257"></a><span class="lineno"> 257</span> <span class="keywordflow">else</span> <span class="keywordflow">if</span>(extension==<span class="stringliteral">"sdp"</span>)</div>
<div class="line"><a id="l00258" name="l00258"></a><span class="lineno"> 258</span> {</div>
<div class="line"><a id="l00259" name="l00259"></a><span class="lineno"> 259</span> vector<Z3i::RealPoint> vectVoxels = PointListReader<Z3i::RealPoint>::getPointsFromFile(inputFileName);</div>
<div class="line"><a id="l00260" name="l00260"></a><span class="lineno"> 260</span> <span class="keywordflow">for</span>(<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i=0;i< vectVoxels.size(); i++){</div>
<div class="line"><a id="l00261" name="l00261"></a><span class="lineno"> 261</span> viewer << Z3i::Point(vectVoxels.at(i), functors::Round<>());</div>
<div class="line"><a id="l00262" name="l00262"></a><span class="lineno"> 262</span> }</div>
<div class="line"><a id="l00263" name="l00263"></a><span class="lineno"> 263</span> }</div>
<div class="line"><a id="l00264" name="l00264"></a><span class="lineno"> 264</span> </div>
<div class="line"><a id="l00265" name="l00265"></a><span class="lineno"> 265</span> <span class="keywordflow">if</span>(displayMesh != <span class="stringliteral">""</span>)</div>
<div class="line"><a id="l00266" name="l00266"></a><span class="lineno"> 266</span> {</div>
<div class="line"><a id="l00267" name="l00267"></a><span class="lineno"> 267</span> <span class="keywordflow">if</span>(colorMesh.size() != 0)</div>
<div class="line"><a id="l00268" name="l00268"></a><span class="lineno"> 268</span> {</div>
<div class="line"><a id="l00269" name="l00269"></a><span class="lineno"> 269</span> Color c(colorMesh[0], colorMesh[1], colorMesh[2], colorMesh[3]);</div>
<div class="line"><a id="l00270" name="l00270"></a><span class="lineno"> 270</span> viewer.drawColor(c);</div>
<div class="line"><a id="l00271" name="l00271"></a><span class="lineno"> 271</span> }</div>
<div class="line"><a id="l00272" name="l00272"></a><span class="lineno"> 272</span> </div>
<div class="line"><a id="l00273" name="l00273"></a><span class="lineno"> 273</span> DGtal::Mesh<Z3i::RealPoint> aMesh(colorMesh.size() == 0);</div>
<div class="line"><a id="l00274" name="l00274"></a><span class="lineno"> 274</span> MeshReader<Z3i::RealPoint>::importOFFFile(displayMesh, aMesh);</div>
<div class="line"><a id="l00275" name="l00275"></a><span class="lineno"> 275</span> viewer << aMesh;</div>
<div class="line"><a id="l00276" name="l00276"></a><span class="lineno"> 276</span> }</div>
<div class="line"><a id="l00277" name="l00277"></a><span class="lineno"> 277</span> </div>
<div class="line"><a id="l00278" name="l00278"></a><span class="lineno"> 278</span> <span class="comment">// First display transparency improve</span></div>
<div class="line"><a id="l00279" name="l00279"></a><span class="lineno"> 279</span> trace.info() << <span class="stringliteral">"[display ready]"</span><< std::endl;</div>
<div class="line"><a id="l00280" name="l00280"></a><span class="lineno"> 280</span> polyscope::state::userCallback = myCallback;</div>
<div class="line"><a id="l00281" name="l00281"></a><span class="lineno"> 281</span> viewer.show();</div>
<div class="line"><a id="l00282" name="l00282"></a><span class="lineno"> 282</span> <span class="keywordflow">return</span> 0;</div>
<div class="line"><a id="l00283" name="l00283"></a><span class="lineno"> 283</span>}</div>
<div class="ttc" id="anamespaceDGtal_html"><div class="ttname"><a href="namespaceDGtal.html">DGtal</a></div><div class="ttdef"><b>Definition</b> <a href="ATu0v1_8h_source.html#l00056">ATu0v1.h:57</a></div></div>
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