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<div class="headertitle"><div class="title">HDF52vol.cpp</div></div>
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<div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span> </div>
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span><span class="preprocessor">#include <iostream></span></div>
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span><span class="preprocessor">#include <DGtal/base/Common.h></span></div>
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span><span class="preprocessor">#include <DGtal/io/readers/HDF5Reader.h></span></div>
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span><span class="preprocessor">#include <DGtal/io/writers/VolWriter.h></span></div>
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span><span class="preprocessor">#include <DGtal/helpers/StdDefs.h></span></div>
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span><span class="preprocessor">#include <DGtal/images/Image.h></span></div>
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span><span class="preprocessor">#include <DGtal/images/ImageContainerBySTLVector.h></span></div>
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span> </div>
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span><span class="preprocessor">#include "CLI11.hpp"</span></div>
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> </div>
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span> </div>
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span><span class="keyword">using namespace </span>std;</div>
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span><span class="keyword">using namespace </span><a class="code hl_namespace" href="namespaceDGtal.html">DGtal</a>;</div>
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span><span class="keyword">using namespace </span>Z3i;</div>
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span> </div>
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> </div>
<div class="line"><a id="l00081" name="l00081"></a><span class="lineno"> 81</span><span class="keywordtype">void</span> missingParam ( std::string param )</div>
<div class="line"><a id="l00082" name="l00082"></a><span class="lineno"> 82</span>{</div>
<div class="line"><a id="l00083" name="l00083"></a><span class="lineno"> 83</span> trace.error() <<<span class="stringliteral">" Parameter: "</span><<param<<<span class="stringliteral">" is required.."</span>;</div>
<div class="line"><a id="l00084" name="l00084"></a><span class="lineno"> 84</span> trace.info() <<std::endl;</div>
<div class="line"><a id="l00085" name="l00085"></a><span class="lineno"> 85</span> exit ( 1 );</div>
<div class="line"><a id="l00086" name="l00086"></a><span class="lineno"> 86</span>}</div>
<div class="line"><a id="l00087" name="l00087"></a><span class="lineno"> 87</span> </div>
<div class="line"><a id="l00088" name="l00088"></a><span class="lineno"> 88</span> </div>
<div class="line"><a id="l00089" name="l00089"></a><span class="lineno"> 89</span><span class="keywordtype">int</span> main(<span class="keywordtype">int</span> argc, <span class="keywordtype">char</span>**argv)</div>
<div class="line"><a id="l00090" name="l00090"></a><span class="lineno"> 90</span>{</div>
<div class="line"><a id="l00091" name="l00091"></a><span class="lineno"> 91</span> </div>
<div class="line"><a id="l00092" name="l00092"></a><span class="lineno"> 92</span><span class="comment">// parse command line using CLI ----------------------------------------------</span></div>
<div class="line"><a id="l00093" name="l00093"></a><span class="lineno"> 93</span> CLI::App app;</div>
<div class="line"><a id="l00094" name="l00094"></a><span class="lineno"> 94</span> std::string inputFileName;</div>
<div class="line"><a id="l00095" name="l00095"></a><span class="lineno"> 95</span> std::string outputFileName {<span class="stringliteral">"result.vol"</span>};</div>
<div class="line"><a id="l00096" name="l00096"></a><span class="lineno"> 96</span> </div>
<div class="line"><a id="l00097" name="l00097"></a><span class="lineno"> 97</span> app.description(<span class="stringliteral">"Convert a 3D 8-bit HDF5 file to vol."</span>);</div>
<div class="line"><a id="l00098" name="l00098"></a><span class="lineno"> 98</span> app.add_option(<span class="stringliteral">"-i,--input,1"</span>, inputFileName, <span class="stringliteral">"Input HDF5 file."</span> )</div>
<div class="line"><a id="l00099" name="l00099"></a><span class="lineno"> 99</span> ->required()</div>
<div class="line"><a id="l00100" name="l00100"></a><span class="lineno"> 100</span> ->check(CLI::ExistingFile);</div>
<div class="line"><a id="l00101" name="l00101"></a><span class="lineno"> 101</span> app.add_option(<span class="stringliteral">"-o,--output,2"</span>, outputFileName, <span class="stringliteral">"Output vol filename."</span> );</div>
<div class="line"><a id="l00102" name="l00102"></a><span class="lineno"> 102</span> </div>
<div class="line"><a id="l00103" name="l00103"></a><span class="lineno"> 103</span> app.get_formatter()->column_width(40);</div>
<div class="line"><a id="l00104" name="l00104"></a><span class="lineno"> 104</span> CLI11_PARSE(app, argc, argv);</div>
<div class="line"><a id="l00105" name="l00105"></a><span class="lineno"> 105</span> <span class="comment">// END parse command line using CLI ----------------------------------------------</span></div>
<div class="line"><a id="l00106" name="l00106"></a><span class="lineno"> 106</span> </div>
<div class="line"><a id="l00107" name="l00107"></a><span class="lineno"> 107</span> <span class="keyword">typedef</span> ImageContainerBySTLVector<Z3i::Domain, unsigned char> MyImageC;</div>
<div class="line"><a id="l00108" name="l00108"></a><span class="lineno"> 108</span> </div>
<div class="line"><a id="l00109" name="l00109"></a><span class="lineno"> 109</span> MyImageC imageC = HDF5Reader< MyImageC >::importHDF5_3D( inputFileName, <span class="stringliteral">"/UInt8Array3D"</span> );</div>
<div class="line"><a id="l00110" name="l00110"></a><span class="lineno"> 110</span> <span class="keywordtype">bool</span> res = VolWriter< MyImageC>::exportVol(outputFileName, imageC);</div>
<div class="line"><a id="l00111" name="l00111"></a><span class="lineno"> 111</span> </div>
<div class="line"><a id="l00112" name="l00112"></a><span class="lineno"> 112</span> <span class="keywordflow">if</span> (res)</div>
<div class="line"><a id="l00113" name="l00113"></a><span class="lineno"> 113</span> <span class="keywordflow">return</span> EXIT_SUCCESS;</div>
<div class="line"><a id="l00114" name="l00114"></a><span class="lineno"> 114</span> <span class="keywordflow">else</span> </div>
<div class="line"><a id="l00115" name="l00115"></a><span class="lineno"> 115</span> {</div>
<div class="line"><a id="l00116" name="l00116"></a><span class="lineno"> 116</span> trace.error()<< <span class="stringliteral">"Error while exporting the volume."</span><<std::endl;</div>
<div class="line"><a id="l00117" name="l00117"></a><span class="lineno"> 117</span> <span class="keywordflow">return</span> EXIT_FAILURE;</div>
<div class="line"><a id="l00118" name="l00118"></a><span class="lineno"> 118</span> }</div>
<div class="line"><a id="l00119" name="l00119"></a><span class="lineno"> 119</span>}</div>
<div class="ttc" id="anamespaceDGtal_html"><div class="ttname"><a href="namespaceDGtal.html">DGtal</a></div><div class="ttdef"><b>Definition</b> <a href="ATu0v1_8h_source.html#l00056">ATu0v1.h:57</a></div></div>
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