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2 | 2 | "cells": [
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3 | 3 | {
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4 | 4 | "cell_type": "code",
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5 |
| - "execution_count": 11, |
| 5 | + "execution_count": null, |
6 | 6 | "id": "196c6071",
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7 | 7 | "metadata": {},
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8 | 8 | "outputs": [],
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18 | 18 | },
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19 | 19 | {
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20 | 20 | "cell_type": "code",
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21 |
| - "execution_count": 14, |
| 21 | + "execution_count": null, |
22 | 22 | "id": "d6f35e01",
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23 | 23 | "metadata": {},
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24 | 24 | "outputs": [],
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31 | 31 | },
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32 | 32 | {
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33 | 33 | "cell_type": "code",
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34 |
| - "execution_count": 15, |
| 34 | + "execution_count": null, |
35 | 35 | "id": "52104b31",
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36 | 36 | "metadata": {},
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37 |
| - "outputs": [ |
38 |
| - { |
39 |
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40 |
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41 |
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42 |
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43 |
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44 |
| - }, |
45 |
| - "text/plain": [ |
46 |
| - "Viewer(geometries=[], gradient_opacity=0.22, point_sets=[], rendered_image=<itk.itkImagePython.itkImageF2; pro…" |
47 |
| - ] |
48 |
| - }, |
49 |
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50 |
| - "output_type": "display_data" |
51 |
| - } |
52 |
| - ], |
| 37 | + "outputs": [], |
53 | 38 | "source": [
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54 | 39 | "InputPixelType = itk.ctype('float')\n",
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55 | 40 | "\n",
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60 | 45 | },
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61 | 46 | {
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62 | 47 | "cell_type": "code",
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63 |
| - "execution_count": 16, |
| 48 | + "execution_count": null, |
64 | 49 | "id": "4297e2ac",
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65 | 50 | "metadata": {},
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66 |
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67 |
| - { |
68 |
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69 |
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70 |
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71 |
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72 |
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73 |
| - }, |
74 |
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75 |
| - "Viewer(geometries=[], gradient_opacity=0.22, point_sets=[], rendered_image=<itk.itkImagePython.itkImageF2; pro…" |
76 |
| - ] |
77 |
| - }, |
78 |
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79 |
| - "output_type": "display_data" |
80 |
| - } |
81 |
| - ], |
| 51 | + "outputs": [], |
82 | 52 | "source": [
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83 | 53 | "smoothed = itk.curvature_anisotropic_diffusion_image_filter(input_image,\n",
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84 | 54 | " time_step=0.125,\n",
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89 | 59 | },
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90 | 60 | {
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91 | 61 | "cell_type": "code",
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92 |
| - "execution_count": 17, |
| 62 | + "execution_count": null, |
93 | 63 | "id": "99186583",
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94 | 64 | "metadata": {},
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95 |
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96 |
| - { |
97 |
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98 |
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99 |
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100 |
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101 |
| - "version_minor": 0 |
102 |
| - }, |
103 |
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104 |
| - "Viewer(geometries=[], gradient_opacity=0.22, point_sets=[], rendered_image=<itk.itkImagePython.itkImageF2; pro…" |
105 |
| - ] |
106 |
| - }, |
107 |
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108 |
| - "output_type": "display_data" |
109 |
| - } |
110 |
| - ], |
| 65 | + "outputs": [], |
111 | 66 | "source": [
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112 | 67 | "sigma = 1.0\n",
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113 | 68 | "\n",
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118 | 73 | },
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119 | 74 | {
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120 | 75 | "cell_type": "code",
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121 |
| - "execution_count": 18, |
| 76 | + "execution_count": null, |
122 | 77 | "id": "8a219f34",
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123 | 78 | "metadata": {},
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124 |
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125 |
| - { |
126 |
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127 |
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128 |
| - "model_id": "b8e81a5c3231401ba52272957a34700b", |
129 |
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130 |
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131 |
| - }, |
132 |
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133 |
| - "Viewer(geometries=[], gradient_opacity=0.22, point_sets=[], rendered_image=<itk.itkImagePython.itkImageF2; pro…" |
134 |
| - ] |
135 |
| - }, |
136 |
| - "metadata": {}, |
137 |
| - "output_type": "display_data" |
138 |
| - } |
139 |
| - ], |
| 79 | + "outputs": [], |
140 | 80 | "source": [
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141 | 81 | "alpha = -0.5\n",
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142 | 82 | "beta = 3.0\n",
|
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152 | 92 | },
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153 | 93 | {
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154 | 94 | "cell_type": "code",
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155 |
| - "execution_count": 19, |
| 95 | + "execution_count": null, |
156 | 96 | "id": "499443a8",
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157 | 97 | "metadata": {},
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158 | 98 | "outputs": [],
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176 | 116 | },
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177 | 117 | {
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178 | 118 | "cell_type": "code",
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179 |
| - "execution_count": 20, |
| 119 | + "execution_count": null, |
180 | 120 | "id": "d2c5e205",
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181 | 121 | "metadata": {},
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182 |
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183 |
| - { |
184 |
| - "data": { |
185 |
| - "application/vnd.jupyter.widget-view+json": { |
186 |
| - "model_id": "5a85dd6a06c24123b6f15ee9e3347c49", |
187 |
| - "version_major": 2, |
188 |
| - "version_minor": 0 |
189 |
| - }, |
190 |
| - "text/plain": [ |
191 |
| - "Viewer(geometries=[], gradient_opacity=0.22, point_sets=[], rendered_image=<itk.itkImagePython.itkImageF2; pro…" |
192 |
| - ] |
193 |
| - }, |
194 |
| - "metadata": {}, |
195 |
| - "output_type": "display_data" |
196 |
| - } |
197 |
| - ], |
| 122 | + "outputs": [], |
198 | 123 | "source": [
|
199 | 124 | "propagation_scaling = 2.0\n",
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200 | 125 | "number_of_iterations = 800\n",
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213 | 138 | },
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214 | 139 | {
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215 | 140 | "cell_type": "code",
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216 |
| - "execution_count": 21, |
| 141 | + "execution_count": null, |
217 | 142 | "id": "1269f1b4",
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218 | 143 | "metadata": {},
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219 | 144 | "outputs": [],
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229 | 154 | },
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230 | 155 | {
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231 | 156 | "cell_type": "code",
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232 |
| - "execution_count": 22, |
| 157 | + "execution_count": null, |
233 | 158 | "id": "58bdf582",
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234 | 159 | "metadata": {},
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235 |
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236 |
| - { |
237 |
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238 |
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239 |
| - "model_id": "c02ac62a77bb498c90c602398a5764ee", |
240 |
| - "version_major": 2, |
241 |
| - "version_minor": 0 |
242 |
| - }, |
243 |
| - "text/plain": [ |
244 |
| - "Viewer(geometries=[], gradient_opacity=0.22, point_sets=[], rendered_image=<itk.itkImagePython.itkImageUC2; pr…" |
245 |
| - ] |
246 |
| - }, |
247 |
| - "metadata": {}, |
248 |
| - "output_type": "display_data" |
249 |
| - } |
250 |
| - ], |
| 160 | + "outputs": [], |
251 | 161 | "source": [
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252 | 162 | "view(thresholded)"
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253 | 163 | ]
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