Copier update (lint config) (#53)

Pull in upstream changes


and also update nginx config to use variable

Author: ejfine

.copier-answers.yml

@@ -1,5 +1,5 @@
 # Changes here will be overwritten by Copier
-_commit: v0.0.56
+_commit: v0.0.57
 _src_path: gh:LabAutomationAndScreening/copier-base-template.git
 description: A web app that is hosted within a local intranet. Nuxt frontend, python
     backend, docker-compose

.devcontainer/devcontainer.json

@@ -61,5 +61,5 @@
   "initializeCommand": "sh .devcontainer/initialize-command.sh",
   "onCreateCommand": "sh .devcontainer/on-create-command.sh",
   "postStartCommand": "sh .devcontainer/post-start-command.sh"
-  // Devcontainer context hash (do not manually edit this, it's managed by a pre-commit hook): b4089c49 # spellchecker:disable-line
+  // Devcontainer context hash (do not manually edit this, it's managed by a pre-commit hook): afe5e8f8 # spellchecker:disable-line
 }

.devcontainer/install-ci-tooling.py

@@ -8,7 +8,7 @@
 from pathlib import Path
 
 UV_VERSION = "0.7.12"
-PNPM_VERSION = "10.12.4"
+PNPM_VERSION = "10.13.1"
 COPIER_VERSION = "9.7.1"
 COPIER_TEMPLATES_EXTENSION_VERSION = "0.3.1"
 PRE_COMMIT_VERSION = "4.2.0"

.pre-commit-config.yaml

@@ -42,7 +42,7 @@ repos:
 
   # Reformatting (should generally come before any file format or other checks, because reformatting can change things)
   - repo: https://github.com/crate-ci/typos
-    rev: 0f0ccba9ed1df83948f0c15026e4f5ccfce46109  # frozen: v1.32.0
+    rev: 392b78fe18a52790c53f42456e46124f77346842  # frozen: v1.34.0
     hooks:
       - id: typos
         exclude:
@@ -84,17 +84,21 @@ repos:
               .*devcontainer.json|
               .*pyrightconfig.json|
               .*tsconfig.json|
+              .*biome.jsonc|
               .*/vendor_files/.*|
           )$
         args: [--autofix, --no-sort-keys]
 
   - repo: https://github.com/biomejs/pre-commit
-    rev: 748e40d32e076a6aaaf3353a2564c8fe43764f79  # frozen: v2.0.0-beta.1
+    rev: a450e9c04887b1305951c298db5999cd30155f74  # frozen: v2.1.1
     hooks:
       - id: biome-check
+        # exclude generated files from codegen and strawberry
         exclude: |
           (?x)^(
               .*generated/graphql.ts|
+              .*/schema.graphql|
+              .*pyrightconfig\.json|
           )$
 
   - repo: https://github.com/pre-commit/mirrors-prettier # TODO: switch to a different approach...this was archived in 2024
@@ -109,13 +113,17 @@ repos:
               .*devcontainer.json|
               .*pyrightconfig.json|
               .*tsconfig.json|
+              .*/__snapshots__/.*|
               .*.min.js|
               .*.min.css|
               .*.umd.js|
               .*.yaml|
               .*.yml|
               .*.md|
+              .*.jsonc|
               .*/vendor_files/.*|
+              .*/schema.graphql|
+              .*generated/graphql.ts|
           )$
         files: (.*.json)|(.*.ts)|(.*.jsx)|(.*.tsx)|(.*.yaml)|(.*.yml)|(.*.md)|(.*.html)|(.*.css)|(.*.scss)|(.*.less)|(.*.vue)|(.*.graphql)|(.*.gql)
 
@@ -214,7 +222,7 @@ repos:
         description: Runs hadolint to lint Dockerfiles
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: 24e02b24b8ab2b7c76225602d13fa60e12d114e6  # frozen: v0.11.9
+    rev: 3d44372123ca5e8617fdb65d9f11facd159b9e95  # frozen: v0.12.3
     hooks:
       - id: ruff
         name: ruff-src

biome.json

@@ -0,0 +1,16 @@
+{
+  "formatter": {
+    "enabled": false,
+  },
+  "linter": {
+    "enabled": false,
+  },
+  "files": {
+    "includes": [
+      "**",
+      "!template/template/biome.jsonc",
+      "!template/biome.jsonc",
+      "!**/*.css", // still too many false positives, so we exclude CSS files
+    ],
+  },
+}

biome.jsonc

@@ -11,9 +11,9 @@ class ContextUpdater(ContextHook):
     @override
     def hook(self, context: dict[Any, Any]) -> dict[Any, Any]:
         context["uv_version"] = "0.7.12"
-        context["pnpm_version"] = "10.12.4"
+        context["pnpm_version"] = "10.13.1"
         context["pre_commit_version"] = "4.2.0"
-        context["pyright_version"] = "1.1.402"
+        context["pyright_version"] = "1.1.403"
         context["pytest_version"] = "8.4.0"
         context["pytest_randomly_version"] = "3.16.0"
         context["pytest_cov_version"] = "6.2.1"

extensions/context.py

@@ -9,7 +9,7 @@ dependencies = [
     "pytest>=8.4.0",
     "pytest-cov>=6.2.1",
     "pytest-randomly>=3.16.0",
-    "pyright[nodejs]>=1.1.402",
+    "pyright[nodejs]>=1.1.403",
     "copier>=9.7.1",
     "copier-templates-extensions>=0.3.1"
 

pyproject.toml

@@ -61,6 +61,7 @@ ignore = [
     "TD002", # Adding author names to TODOs erodes shared ownership of codebase. Git history provides information about who originally created the TODO if that information is vitally needed
     "TD003", # Up to the author's judgement whether a TODO requires a link to an issue or not
     "TID252", # Sometimes it makes sense to use relative imports, that's a judgement call for us, not ruff
+    "TC006", # Adding quotes around classes unnecessarily confuses the IDE for automatic refactoring
 ]
 
 # Allow fix for all enabled rules (when `--fix`) is provided.

ruff.toml

@@ -41,13 +41,25 @@ repos:
 
   # Reformatting (should generally come before any file format or other checks, because reformatting can change things)
   - repo: https://github.com/crate-ci/typos
-    rev: 2300ad1b6b5c37da54bcafb1a06211196503eac9 # frozen: v1
+    rev: 392b78fe18a52790c53f42456e46124f77346842  # frozen: v1.34.0
     hooks:
       - id: typos
+        exclude:
+          |
+          (?x)^(
+              .*\.min.js|
+              .*\.min.css|
+              .*\.umd.js|
+          )$
   - repo: https://github.com/pre-commit/pre-commit-hooks
     rev: cef0300fd0fc4d2a87a85fa2093c6b283ea36f4b # frozen: v5.0.0
     hooks:
       - id: trailing-whitespace
+        exclude:
+          |
+          (?x)^(
+              .*/vendor_files/.*|
+          )$
       - id: end-of-file-fixer
         # the XML formatter hook doesn't leave a blank line at the end, so excluding XML files from this hook to avoid conflicts
         exclude:
@@ -71,18 +83,21 @@ repos:
               .*devcontainer.json|
               .*pyrightconfig.json|
               .*tsconfig.json|
+              .*biome.jsonc|
+              .*/vendor_files/.*|
           )$
         args: [--autofix, --no-sort-keys]
 
   - repo: https://github.com/biomejs/pre-commit
-    rev: 748e40d32e076a6aaaf3353a2564c8fe43764f79  # frozen: v2.0.0-beta.1
+    rev: a450e9c04887b1305951c298db5999cd30155f74  # frozen: v2.1.1
     hooks:
       - id: biome-check
         # exclude generated files from codegen and strawberry
         exclude: |
           (?x)^(
               .*generated/graphql.ts|
               .*/schema.graphql|
+              pyrightconfig\.json|
           )$
 
   - repo: https://github.com/pre-commit/mirrors-prettier # TODO: switch to a different approach...this was archived in 2024
@@ -97,18 +112,22 @@ repos:
               .*devcontainer.json|
               .*pyrightconfig.json|
               .*tsconfig.json|
+              .*/__snapshots__/.*|
               .*.min.js|
               .*.min.css|
               .*.umd.js|
               .*.yaml|
               .*.yml|
               .*.md|
+              .*/vendor_files/.*|
               .*/schema.graphql|
+              .*generated/graphql.ts|
           )$
+        files: (.*.json)|(.*.ts)|(.*.jsx)|(.*.tsx)|(.*.yaml)|(.*.yml)|(.*.md)|(.*.html)|(.*.css)|(.*.scss)|(.*.less)|(.*.vue)|(.*.graphql)|(.*.gql)
 
   - repo: https://github.com/myint/docformatter
     # black seems to be working on formatting docstrings, but use this for now
-    rev: eb1df347edd128b30cd3368dddc3aa65edcfac38 # tip of main that is compatible with pre-commit v4
+    rev: e73b8ba0c1316be565983236c72e653ad44e6b66  # frozen: v1.7.7
     hooks:
       - id: docformatter
         exclude: (tests*)|(exceptions\.py)|(warnings\.py)
@@ -145,7 +164,13 @@ repos:
               .*tsconfig.json|
           )$
       - id: check-yaml
-        exclude: .copier-answers.yml # This is an autogenerated YAML file by Copier that throws 'found unhashable key' errors
+        # .copier-answers.yml is an autogenerated YAML file by Copier that throws 'found unhashable key' errors
+        # Helm charts contain other non-YAML markers that cause errors here. they should be checked with helm-lint instead
+        exclude: |
+          (?x)^(
+              .copier-answers.yml|
+              (.*/helm/.*)|
+          )$
       - id: check-xml
       - id: check-merge-conflict
       - id: check-case-conflict
@@ -219,10 +244,11 @@ repos:
     hooks:
       - id: hadolint-docker
         name: Lint Dockerfiles
+        exclude: .*\.jinja$
         description: Runs hadolint to lint Dockerfiles
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: e84319e627902e1b348574ecf3238dc511933dc7  # frozen: v0.11.7
+    rev: 3d44372123ca5e8617fdb65d9f11facd159b9e95  # frozen: v0.12.3
     hooks:
       - id: ruff
         name: ruff-src
@@ -235,7 +261,7 @@ repos:
       - id: ruff-format{% endraw %}{% if has_backend %}{% raw %}
 
   - repo: https://github.com/pylint-dev/pylint
-    rev: 7ac5a4d4f77576df3a00e63f86ca86e0e1780b47  # frozen: v3.3.6
+    rev: f798a4a3508bcbb8ad0773ae14bf32d28dcfdcbe  # frozen: v3.3.7
     hooks:
       - id: pylint
         name: pylint