Skip to content

Commit 4c6f183

Browse files
rmflightrmflight
committed
updated test
1 parent 182058a commit 4c6f183

File tree

2 files changed

+56
-56
lines changed

2 files changed

+56
-56
lines changed

‎tests/testthat/test-cor-fast.R‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -57,7 +57,7 @@ test_that("na values are handled correctly by cor_fast", {
5757
cor_base_complete = cor.test(x[, 1], x[, 2], method = "pearson", use = "complete")
5858
cor_fast_complete = cor_fast(x = x[, 1], y = x[, 2], method = "pearson", use = "complete", return_matrix = FALSE)
5959
expect_equal(cor_base_complete$estimate[["cor"]], cor_fast_complete$rho$rho[1])
60-
60+
expect_equal(cor_fast_complete$rho$n_values[1], 84)
6161
cor_fast_pairwise_1 = cor_fast(x = x[, 1], y = x[, 2], method = "pearson", use = "pairwise.complete.obs", return_matrix = FALSE)
6262
cor_fast_pairwise_all = cor_fast(x, method = "pearson", use = "pairwise.complete.obs", return_matrix = FALSE)
6363
expect_equal(cor_fast_pairwise_1$rho$rho[1], cor_fast_pairwise_all$rho$rho[1])

‎tests/testthat/withmemory_logs.log‎

Lines changed: 55 additions & 55 deletions
Original file line numberDiff line numberDiff line change
@@ -1,55 +1,55 @@
1-
INFO [2025-01-22 09:21:09] Processing missing values ...
2-
INFO [2025-01-22 09:21:09] Figuring out comparisons to do ...
3-
INFO [2025-01-22 09:21:09] Splitting up across compute ...
4-
INFO [2025-01-22 09:21:09] Running correlations ...
5-
INFO [2025-01-22 09:21:09] Memory: Total: 32539440 kB, Available: 9213456 kB, Active: 19293060 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
6-
INFO [2025-01-22 09:21:09] Memory: Total: 32539440 kB, Available: 9213464 kB, Active: 19292900 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
7-
INFO [2025-01-22 09:21:09] Memory: Total: 32539440 kB, Available: 9213212 kB, Active: 19292904 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
8-
INFO [2025-01-22 09:21:09] Memory: Total: 32539440 kB, Available: 9213212 kB, Active: 19292908 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
9-
INFO [2025-01-22 09:21:09] Memory: Total: 32539440 kB, Available: 9212972 kB, Active: 19292908 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
10-
INFO [2025-01-22 09:21:09] Memory: Total: 32539440 kB, Available: 9212972 kB, Active: 19292936 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
11-
INFO [2025-01-22 09:21:09] Memory: Total: 32539440 kB, Available: 9212972 kB, Active: 19293024 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
12-
INFO [2025-01-22 09:21:09] Memory: Total: 32539440 kB, Available: 9212972 kB, Active: 19293024 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
13-
INFO [2025-01-22 09:21:09] Memory: Total: 32539440 kB, Available: 9212972 kB, Active: 19293052 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
14-
INFO [2025-01-22 09:21:09] Memory: Total: 32539440 kB, Available: 9212972 kB, Active: 19293052 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
15-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9212972 kB, Active: 19293052 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
16-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9212972 kB, Active: 19293164 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
17-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9212972 kB, Active: 19293164 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
18-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9212972 kB, Active: 19293184 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
19-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9212972 kB, Active: 19293180 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
20-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9212972 kB, Active: 19293272 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
21-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9212748 kB, Active: 19293272 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
22-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9212748 kB, Active: 19293292 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
23-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9212748 kB, Active: 19293320 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
24-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9212748 kB, Active: 19293308 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
25-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9212496 kB, Active: 19293332 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
26-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9211740 kB, Active: 19293912 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
27-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9209724 kB, Active: 19295528 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
28-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9209220 kB, Active: 19296516 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
29-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9207708 kB, Active: 19297708 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
30-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9207456 kB, Active: 19298820 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
31-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9205440 kB, Active: 19299896 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
32-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9204212 kB, Active: 19301976 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
33-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9203208 kB, Active: 19304024 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
34-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9201808 kB, Active: 19298860 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
35-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9200592 kB, Active: 19299060 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
36-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9200088 kB, Active: 19300312 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
37-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9198100 kB, Active: 19301484 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
38-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9197596 kB, Active: 19302696 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
39-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9195832 kB, Active: 19303868 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
40-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9195076 kB, Active: 19305040 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
41-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9193564 kB, Active: 19306208 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
42-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9193060 kB, Active: 19307404 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
43-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9191548 kB, Active: 19308572 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
44-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9190568 kB, Active: 19309584 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
45-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9189812 kB, Active: 19310924 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
46-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9188048 kB, Active: 19312236 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
47-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9187068 kB, Active: 19313112 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
48-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9185556 kB, Active: 19314600 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
49-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9186976 kB, Active: 19315824 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
50-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9185212 kB, Active: 19317000 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
51-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9184204 kB, Active: 19317900 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
52-
INFO [2025-01-22 09:21:10] Memory: Total: 32539440 kB, Available: 9183952 kB, Active: 19319352 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
53-
INFO [2025-01-22 09:21:11] Memory: Total: 32539440 kB, Available: 9182440 kB, Active: 19320444 kB, SwapTotal: 33160692 kB, SwapFree: 33160668 kB
54-
INFO [2025-01-22 09:21:11] Recombining results ...
55-
INFO [2025-01-22 09:21:11] Generating the output matrix ...
1+
INFO [2025-01-22 15:12:31] Processing missing values ...
2+
INFO [2025-01-22 15:12:31] Figuring out comparisons to do ...
3+
INFO [2025-01-22 15:12:31] Splitting up across compute ...
4+
INFO [2025-01-22 15:12:31] Running correlations ...
5+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6409988 kB, Active: 18075072 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
6+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6409736 kB, Active: 18076120 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
7+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6408980 kB, Active: 18076652 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
8+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6408980 kB, Active: 18076628 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
9+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6408980 kB, Active: 18076628 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
10+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6408980 kB, Active: 18076784 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
11+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6408476 kB, Active: 18076768 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
12+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6408460 kB, Active: 18076800 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
13+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6408460 kB, Active: 18076800 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
14+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6408460 kB, Active: 18076700 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
15+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6408460 kB, Active: 18076856 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
16+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6404932 kB, Active: 18079024 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
17+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6404932 kB, Active: 18079308 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
18+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6404932 kB, Active: 18079448 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
19+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6404680 kB, Active: 18077456 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
20+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6404680 kB, Active: 18077456 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
21+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6404684 kB, Active: 18077632 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
22+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6404684 kB, Active: 18077632 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
23+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6408076 kB, Active: 18077856 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
24+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407836 kB, Active: 18077872 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
25+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407836 kB, Active: 18077976 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
26+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407836 kB, Active: 18078000 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
27+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407612 kB, Active: 18077980 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
28+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407612 kB, Active: 18077984 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
29+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407612 kB, Active: 18077984 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
30+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407612 kB, Active: 18078000 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
31+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407612 kB, Active: 18078008 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
32+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407612 kB, Active: 18078016 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
33+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407612 kB, Active: 18078024 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
34+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407612 kB, Active: 18078028 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
35+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407612 kB, Active: 18078032 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
36+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407612 kB, Active: 18078032 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
37+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407616 kB, Active: 18078112 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
38+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407616 kB, Active: 18078064 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
39+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407616 kB, Active: 18078064 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
40+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407616 kB, Active: 18078180 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
41+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407616 kB, Active: 18078180 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
42+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407616 kB, Active: 18078180 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
43+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407616 kB, Active: 18078184 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
44+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407616 kB, Active: 18078160 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
45+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407616 kB, Active: 18078160 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
46+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407616 kB, Active: 18078172 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
47+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407616 kB, Active: 18078232 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
48+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407616 kB, Active: 18078240 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
49+
INFO [2025-01-22 15:12:31] Memory: Total: 32539440 kB, Available: 6407616 kB, Active: 18078240 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
50+
INFO [2025-01-22 15:12:32] Memory: Total: 32539440 kB, Available: 6407392 kB, Active: 18078240 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
51+
INFO [2025-01-22 15:12:32] Memory: Total: 32539440 kB, Available: 6407392 kB, Active: 18078240 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
52+
INFO [2025-01-22 15:12:32] Memory: Total: 32539440 kB, Available: 6407140 kB, Active: 18078256 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
53+
INFO [2025-01-22 15:12:32] Memory: Total: 32539440 kB, Available: 6406668 kB, Active: 18078096 kB, SwapTotal: 33160692 kB, SwapFree: 33087452 kB
54+
INFO [2025-01-22 15:12:32] Recombining results ...
55+
INFO [2025-01-22 15:12:32] Generating the output matrix ...

0 commit comments

Comments
 (0)