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.dockerignore

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build
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dist/**/*
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dist
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fmripost_template.egg-info/**/*
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fmripost_template.egg-info
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simbids.egg-info/**/*
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simbids.egg-info
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.eggs/**/*
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.eggs

.github/ISSUE_TEMPLATE/bug_report.yml

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- type: input
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id: version
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attributes:
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label: What version of fMRIPost-template are you running?
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label: What version of SimBIDS are you running?
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validations:
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required: true
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- type: dropdown
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id: environment
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attributes:
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label: How are you running fMRIPost-template?
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label: How are you running SimBIDS?
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options:
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- Docker
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- Singularity
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label: Are you reusing any previously computed results?
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description: |
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You can select multiple options.
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We recommend using a fresh working directory when upgrading to a new fMRIPost-template minor series.
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We recommend using a fresh working directory when upgrading to a new SimBIDS minor series.
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multiple: true
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options:
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- FreeSurfer

.github/ISSUE_TEMPLATE/config.yml

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blank_issues_enabled: true
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contact_links:
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- name: Questions
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url: https://neurostars.org/tag/fmripost-template
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url: https://neurostars.org/tag/simbids
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about: For general questions, please search Neurostars for existing posts before starting a new one.

.github/ISSUE_TEMPLATE/feature_request.yml

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value: |
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## Thank you for your suggestion!
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We welcome any ideas about how to make *fMRIPost-template* better for the community.
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We welcome any ideas about how to make *SimBIDS* better for the community.
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Please keep in mind that features may not get implemented immediately.
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- type: textarea
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id: summary
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attributes:
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label: What would you like to see added in fMRIPost-template?
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label: What would you like to see added in SimBIDS?
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description: |
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What are you trying to achieve with fMRIPost-template?
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What are you trying to achieve with SimBIDS?
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Is this a more convenient way to do something that is already possible, or is a workaround currently unfeasible?
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Does this feature adhere to the [NiPreps driving principles](https://www.nipreps.org/community/CONTRIBUTING/#driving-principles)?
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validations:

.github/config.yml

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Welcome, new contributor!
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We ask you to read through the Contributing Guide:
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https://github.com/nipreps/fmripost-template/blob/main/CONTRIBUTING.md
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https://github.com/nipreps/simbids/blob/main/CONTRIBUTING.md
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These are guidelines intended to make communication easier by describing a consistent process, but
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don't worry if you don't get it everything exactly "right" on the first try.
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lot of time coding.
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2) Please use a descriptive title for your pull request.
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Please remember to set your pull request as a "draft" if it is not ready for review.
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3) Any code you submit will be licensed under the same terms (Apache License 2.0) as the rest of fMRIPost-template.
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3) Any code you submit will be licensed under the same terms (Apache License 2.0) as the rest of SimBIDS.
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4) We invite every contributor to add themselves to the `.zenodo.json` file
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(https://github.com/nipreps/fmripost-template/blob/main/.zenodo.json), which will result in your being listed as an author
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(https://github.com/nipreps/simbids/blob/main/.zenodo.json), which will result in your being listed as an author
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at the next release. Please add yourself as the next-to-last entry, just above Russ.
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A pull request is a conversation. We may ask you to make some changes before accepting your PR,

.github/pull_request_template.md

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## Changes proposed in this pull request
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<!--
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Please describe here the main features / changes proposed for review and integration in fMRIPost-template
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Please describe here the main features / changes proposed for review and integration in SimBIDS
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If this PR addresses some existing problem, please use GitHub's citing tools
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(e.g., ref #, closes # or fixes #).
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If there is not an existing issue open describing the problem, please consider opening a new
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issue first and then link it from here (so the *fMRIPost-template* community has a better understanding
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issue first and then link it from here (so the *SimBIDS* community has a better understanding
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of ongoing development efforts and possible overlaps between contributions).
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-->
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.github/workflows/docker.yml

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id: meta
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uses: docker/[email protected]
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with:
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images: nipreps/fmripost-template
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images: nipreps/simbids
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# generate Docker tags based on the following events/attributes
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tags: |
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type=ref,event=branch

.zenodo.json

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{
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"title": "fMRIPost-template: a robust postprocessing pipeline for functional MRI",
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"description": "<p>fMRIPost-template is a robust and easy-to-use pipeline for post-processing preprocessed fMRI data organized in BIDS format.</p>",
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"title": "SimBIDS: a robust postprocessing pipeline for functional MRI",
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"description": "<p>SimBIDS is a robust and easy-to-use pipeline for post-processing preprocessed fMRI data organized in BIDS format.</p>",
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"contributors": [
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{
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"affiliation": "Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland",
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"license": "Apache-2.0",
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"related_identifiers": [
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{
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"identifier": "https://fmripost_template.org",
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"identifier": "https://simbids.org",
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"relation": "documents",
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"scheme": "url"
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},

CHANGES.rst

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24.0.0 ()
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=========
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fMRIPost-template's initial release.
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SimBIDS's initial release.

CODE_OF_CONDUCT.md

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# fMRIPost-template Code of Conduct
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# SimBIDS Code of Conduct
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*fMRIPost-template* is a project of the
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*SimBIDS* is a project of the
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[*NiPreps* Community, and is under its code of conduct](https://www.nipreps.org/community/CODE_OF_CONDUCT/).

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