fix

lomereiter · lomereiter · commit 24b81ccea1a7 · 2013-09-30T14:36:32.000+04:00
diff --git a/sambamba/markdup.d b/sambamba/markdup.d
@@ -801,8 +801,9 @@ VirtualOffset[] getDuplicateOffsets(R)(R reads, ReadGroupIndex rg_index,
                 // 2 * VirtualOffset.sizeof <= PairedEndsInfo.sizeof
                 for (size_t i = 0; i < k; ++i) {
                     if (i != best_k) {
-                        pvo[n_vo_pe++] = pe[i].vo1;
-                        pvo[n_vo_pe++] = pe[i].vo2;
+                        auto paired_ends = pe[i];
+                        pvo[n_vo_pe++] = paired_ends.vo1;
+                        pvo[n_vo_pe++] = paired_ends.vo2;
                     }
                 }
 

Original file line number	Diff line number	Diff line change
`@@ -801,8 +801,9 @@ VirtualOffset[] getDuplicateOffsets(R)(R reads, ReadGroupIndex rg_index,`
`801`	`801`	`// 2 * VirtualOffset.sizeof <= PairedEndsInfo.sizeof`
`802`	`802`	`for (size_t i = 0; i < k; ++i) {`
`803`	`803`	`if (i != best_k) {`
`804`		`- pvo[n_vo_pe++] = pe[i].vo1;`
`805`		`- pvo[n_vo_pe++] = pe[i].vo2;`
	`804`	`+ auto paired_ends = pe[i];`
	`805`	`+ pvo[n_vo_pe++] = paired_ends.vo1;`
	`806`	`+ pvo[n_vo_pe++] = paired_ends.vo2;`
`806`	`807`	`}`
`807`	`808`	`}`
`808`	`809`