Partitioning Compactor

Signed-off-by: Alex Le <[email protected]>

Author: alexqyle

pkg/compactor/background_chunks_series_set.go

@@ -0,0 +1,60 @@
+package compactor
+
+import (
+	"context"
+
+	"github.com/prometheus/prometheus/storage"
+	"github.com/prometheus/prometheus/util/annotations"
+)
+
+type backgrounChunkSeriesSet struct {
+	nextSet chan storage.ChunkSeries
+	actual  storage.ChunkSeries
+	cs      storage.ChunkSeriesSet
+}
+
+func (b *backgrounChunkSeriesSet) Next() bool {
+	s, ok := <-b.nextSet
+	b.actual = s
+	return ok
+}
+
+func (b *backgrounChunkSeriesSet) At() storage.ChunkSeries {
+	return b.actual
+}
+
+func (b *backgrounChunkSeriesSet) Err() error {
+	return b.cs.Err()
+}
+
+func (b *backgrounChunkSeriesSet) Warnings() annotations.Annotations {
+	return b.cs.Warnings()
+}
+
+func (b *backgrounChunkSeriesSet) run(ctx context.Context) {
+	for {
+		if !b.cs.Next() {
+			close(b.nextSet)
+			return
+		}
+
+		select {
+		case b.nextSet <- b.cs.At():
+		case <-ctx.Done():
+			return
+		}
+	}
+}
+
+func NewBackgroundChunkSeriesSet(ctx context.Context, cs storage.ChunkSeriesSet) storage.ChunkSeriesSet {
+	r := &backgrounChunkSeriesSet{
+		cs:      cs,
+		nextSet: make(chan storage.ChunkSeries, 1000),
+	}
+
+	go func() {
+		r.run(ctx)
+	}()
+
+	return r
+}

pkg/compactor/block_visit_marker.go

@@ -16,13 +16,16 @@ import (
 	"github.com/prometheus/client_golang/prometheus"
 	"github.com/thanos-io/objstore"
 	"github.com/thanos-io/thanos/pkg/block/metadata"
+	"golang.org/x/sync/errgroup"
 
 	"github.com/cortexproject/cortex/pkg/util/runutil"
 )
 
 const (
-	// BlockVisitMarkerFile is the known json filename for representing the most recent compactor visit.
-	BlockVisitMarkerFile = "visit-mark.json"
+	// BlockVisitMarkerFileSuffix is the known suffix of json filename for representing the most recent compactor visit.
+	BlockVisitMarkerFileSuffix = "visit-mark.json"
+	// BlockVisitMarkerFilePrefix is the known prefix of json filename for representing the most recent compactor visit.
+	BlockVisitMarkerFilePrefix = "partition-"
 	// VisitMarkerVersion1 is the current supported version of visit-mark file.
 	VisitMarkerVersion1 = 1
 )
@@ -34,23 +37,34 @@ var (
 )
 
 type BlockVisitMarker struct {
-	CompactorID string `json:"compactorID"`
+	CompactorID        string      `json:"compactorID"`
+	Status             VisitStatus `json:"status"`
+	PartitionedGroupID uint32      `json:"partitionedGroupID"`
+	PartitionID        int         `json:"partitionID"`
 	// VisitTime is a unix timestamp of when the block was visited (mark updated).
 	VisitTime int64 `json:"visitTime"`
 	// Version of the file.
 	Version int `json:"version"`
 }
 
-func (b *BlockVisitMarker) isVisited(blockVisitMarkerTimeout time.Duration) bool {
-	return time.Now().Before(time.Unix(b.VisitTime, 0).Add(blockVisitMarkerTimeout))
+func (b *BlockVisitMarker) isVisited(blockVisitMarkerTimeout time.Duration, partitionID int) bool {
+	return b.isCompleted() || partitionID == b.PartitionID && time.Now().Before(time.Unix(b.VisitTime, 0).Add(blockVisitMarkerTimeout))
 }
 
-func (b *BlockVisitMarker) isVisitedByCompactor(blockVisitMarkerTimeout time.Duration, compactorID string) bool {
-	return b.CompactorID == compactorID && time.Now().Before(time.Unix(b.VisitTime, 0).Add(blockVisitMarkerTimeout))
+func (b *BlockVisitMarker) isVisitedByCompactor(blockVisitMarkerTimeout time.Duration, partitionID int, compactorID string) bool {
+	return b.CompactorID == compactorID && b.isVisited(blockVisitMarkerTimeout, partitionID)
 }
 
-func ReadBlockVisitMarker(ctx context.Context, bkt objstore.InstrumentedBucketReader, logger log.Logger, blockID string, blockVisitMarkerReadFailed prometheus.Counter) (*BlockVisitMarker, error) {
-	visitMarkerFile := path.Join(blockID, BlockVisitMarkerFile)
+func (b *BlockVisitMarker) isCompleted() bool {
+	return b.Status == Completed
+}
+
+func GetBlockVisitMarkerFile(blockID string, partitionID int) string {
+	return path.Join(blockID, fmt.Sprintf("%s%d-%s", BlockVisitMarkerFilePrefix, partitionID, BlockVisitMarkerFileSuffix))
+}
+
+func ReadBlockVisitMarker(ctx context.Context, bkt objstore.InstrumentedBucketReader, logger log.Logger, blockID string, partitionID int, blockVisitMarkerReadFailed prometheus.Counter) (*BlockVisitMarker, error) {
+	visitMarkerFile := GetBlockVisitMarkerFile(blockID, partitionID)
 	visitMarkerFileReader, err := bkt.ReaderWithExpectedErrs(bkt.IsObjNotFoundErr).Get(ctx, visitMarkerFile)
 	if err != nil {
 		if bkt.IsObjNotFoundErr(err) {
@@ -76,15 +90,23 @@ func ReadBlockVisitMarker(ctx context.Context, bkt objstore.InstrumentedBucketRe
 	return &blockVisitMarker, nil
 }
 
-func UpdateBlockVisitMarker(ctx context.Context, bkt objstore.Bucket, blockID string, reader io.Reader, blockVisitMarkerWriteFailed prometheus.Counter) error {
-	blockVisitMarkerFilePath := path.Join(blockID, BlockVisitMarkerFile)
+func UpdateBlockVisitMarker(ctx context.Context, bkt objstore.Bucket, blockID string, partitionID int, reader io.Reader, blockVisitMarkerWriteFailed prometheus.Counter) error {
+	blockVisitMarkerFilePath := GetBlockVisitMarkerFile(blockID, partitionID)
 	if err := bkt.Upload(ctx, blockVisitMarkerFilePath, reader); err != nil {
 		blockVisitMarkerWriteFailed.Inc()
 		return err
 	}
 	return nil
 }
 
+func generateBlocksInfo(blocks []*metadata.Meta) string {
+	var blockIds []string
+	for _, block := range blocks {
+		blockIds = append(blockIds, block.ULID.String())
+	}
+	return strings.Join(blockIds, ",")
+}
+
 func markBlocksVisited(
 	ctx context.Context,
 	bkt objstore.Bucket,
@@ -98,54 +120,121 @@ func markBlocksVisited(
 		blockVisitMarkerWriteFailed.Inc()
 		return
 	}
-	reader := bytes.NewReader(visitMarkerFileContent)
+	g, _ := errgroup.WithContext(ctx)
+	g.SetLimit(32)
 	for _, block := range blocks {
-		select {
-		// Exit early if possible.
-		case <-ctx.Done():
-			return
-		default:
-		}
-
 		blockID := block.ULID.String()
-		if err := UpdateBlockVisitMarker(ctx, bkt, blockID, reader, blockVisitMarkerWriteFailed); err != nil {
-			level.Error(logger).Log("msg", "unable to upsert visit marker file content for block", "blockID", blockID, "err", err)
-		}
-		reader.Reset(visitMarkerFileContent)
+		g.Go(func() error {
+			select {
+			// Exit early if possible.
+			case <-ctx.Done():
+				return nil
+			default:
+			}
+
+			reader := bytes.NewReader(visitMarkerFileContent)
+			if err := UpdateBlockVisitMarker(ctx, bkt, blockID, marker.PartitionID, reader, blockVisitMarkerWriteFailed); err != nil {
+				level.Error(logger).Log("msg", "unable to upsert visit marker file content for block", "partition_id", marker.PartitionID, "block_id", blockID, "err", err)
+			}
+			reader.Reset(visitMarkerFileContent)
+			return nil
+		})
+	}
+	if err := g.Wait(); err != nil {
+		blockVisitMarkerWriteFailed.Inc()
+		return
 	}
+	level.Debug(logger).Log("msg", "marked blocks visited", "partition_id", marker.PartitionID, "blocks", generateBlocksInfo(blocks))
 }
 
-func markBlocksVisitedHeartBeat(ctx context.Context, bkt objstore.Bucket, logger log.Logger, blocks []*metadata.Meta, compactorID string, blockVisitMarkerFileUpdateInterval time.Duration, blockVisitMarkerWriteFailed prometheus.Counter) {
-	var blockIds []string
-	for _, block := range blocks {
-		blockIds = append(blockIds, block.ULID.String())
-	}
-	blocksInfo := strings.Join(blockIds, ",")
-	level.Info(logger).Log("msg", fmt.Sprintf("start heart beat for blocks: %s", blocksInfo))
+func markBlocksVisitedHeartBeat(
+	ctx context.Context,
+	bkt objstore.Bucket,
+	logger log.Logger,
+	blocks []*metadata.Meta,
+	partitionedGroupID uint32,
+	partitionID int,
+	compactorID string,
+	blockVisitMarkerFileUpdateInterval time.Duration,
+	blockVisitMarkerWriteFailed prometheus.Counter,
+	errChan chan error,
+) {
+	blocksInfo := generateBlocksInfo(blocks)
+	level.Info(logger).Log("msg", "start visit marker heart beat", "partitioned_group_id", partitionedGroupID, "partition_id", partitionID, "blocks", blocksInfo)
 	ticker := time.NewTicker(blockVisitMarkerFileUpdateInterval)
 	defer ticker.Stop()
+	isComplete := false
 heartBeat:
 	for {
 		level.Debug(logger).Log("msg", fmt.Sprintf("heart beat for blocks: %s", blocksInfo))
 		blockVisitMarker := BlockVisitMarker{
-			VisitTime:   time.Now().Unix(),
-			CompactorID: compactorID,
-			Version:     VisitMarkerVersion1,
+			VisitTime:          time.Now().Unix(),
+			CompactorID:        compactorID,
+			Status:             Pending,
+			PartitionedGroupID: partitionedGroupID,
+			PartitionID:        partitionID,
+			Version:            VisitMarkerVersion1,
 		}
 		markBlocksVisited(ctx, bkt, logger, blocks, blockVisitMarker, blockVisitMarkerWriteFailed)
 
 		select {
 		case <-ctx.Done():
+			level.Warn(logger).Log("msg", "visit marker heart beat got cancelled", "partitioned_group_id", partitionedGroupID, "partition_id", partitionID, "blocks", blocksInfo)
 			break heartBeat
 		case <-ticker.C:
 			continue
+		case err := <-errChan:
+			isComplete = err == nil
+			if err != nil {
+				level.Warn(logger).Log("msg", "stop visit marker heart beat due to error", "err", err, "partitioned_group_id", partitionedGroupID, "partition_id", partitionID, "blocks", blocksInfo)
+			}
+			break heartBeat
 		}
 	}
-	level.Info(logger).Log("msg", fmt.Sprintf("stop heart beat for blocks: %s", blocksInfo))
+	if isComplete {
+		level.Info(logger).Log("msg", "update visit marker to completed status", "partitioned_group_id", partitionedGroupID, "partition_id", partitionID, "blocks", blocksInfo)
+		markBlocksVisitMarkerCompleted(context.Background(), bkt, logger, blocks, partitionedGroupID, partitionID, compactorID, blockVisitMarkerWriteFailed)
+	}
+	level.Info(logger).Log("msg", "stop visit marker heart beat", "partitioned_group_id", partitionedGroupID, "partition_id", partitionID, "blocks", blocksInfo)
+}
+
+func markBlocksVisitMarkerCompleted(
+	ctx context.Context,
+	bkt objstore.Bucket,
+	logger log.Logger,
+	blocks []*metadata.Meta,
+	partitionedGroupID uint32,
+	partitionID int,
+	compactorID string,
+	blockVisitMarkerWriteFailed prometheus.Counter,
+) {
+	blockVisitMarker := BlockVisitMarker{
+		VisitTime:          time.Now().Unix(),
+		CompactorID:        compactorID,
+		Status:             Completed,
+		PartitionedGroupID: partitionedGroupID,
+		PartitionID:        partitionID,
+		Version:            VisitMarkerVersion1,
+	}
+	visitMarkerFileContent, err := json.Marshal(blockVisitMarker)
+	if err != nil {
+		blockVisitMarkerWriteFailed.Inc()
+		return
+	}
+	reader := bytes.NewReader(visitMarkerFileContent)
+	for _, block := range blocks {
+		blockID := block.ULID.String()
+		if err := UpdateBlockVisitMarker(ctx, bkt, blockID, blockVisitMarker.PartitionID, reader, blockVisitMarkerWriteFailed); err != nil {
+			level.Error(logger).Log("msg", "unable to upsert completed visit marker file content for block", "partitioned_group_id", blockVisitMarker.PartitionedGroupID, "partition_id", blockVisitMarker.PartitionID, "block_id", blockID, "err", err)
+		} else {
+			level.Info(logger).Log("msg", "block partition is completed", "partitioned_group_id", blockVisitMarker.PartitionedGroupID, "partition_id", blockVisitMarker.PartitionID, "block_id", blockID)
+		}
+		reader.Reset(visitMarkerFileContent)
+	}
 }
 
 func IsBlockVisitMarker(path string) bool {
-	return strings.HasSuffix(path, BlockVisitMarkerFile)
+	return strings.HasSuffix(path, BlockVisitMarkerFileSuffix)
 }
 
 func IsNotBlockVisitMarkerError(err error) bool {

pkg/compactor/block_visit_marker_test.go

@@ -2,6 +2,7 @@ package compactor
 
 import (
 	"context"
+	"fmt"
 	"testing"
 	"time"
 
@@ -85,10 +86,77 @@ func TestMarkBlocksVisited(t *testing.T) {
 			logger := log.NewNopLogger()
 			markBlocksVisited(ctx, bkt, logger, tcase.blocks, tcase.visitMarker, dummyCounter)
 			for _, meta := range tcase.blocks {
-				res, err := ReadBlockVisitMarker(ctx, objstore.WithNoopInstr(bkt), logger, meta.ULID.String(), dummyCounter)
+				res, err := ReadBlockVisitMarker(ctx, objstore.WithNoopInstr(bkt), logger, meta.ULID.String(), tcase.visitMarker.PartitionID, dummyCounter)
 				require.NoError(t, err)
 				require.Equal(t, tcase.visitMarker, *res)
 			}
 		})
 	}
 }
+
+func TestMarkBlockVisitedHeartBeat(t *testing.T) {
+	partitionedGroupID := uint32(12345)
+	partitionID := 0
+	compactorID := "test-compactor"
+	for _, tcase := range []struct {
+		name           string
+		isCancelled    bool
+		compactionErr  error
+		expectedStatus VisitStatus
+	}{
+		{
+			name:           "heart beat got cancelled",
+			isCancelled:    true,
+			compactionErr:  nil,
+			expectedStatus: Pending,
+		},
+		{
+			name:           "heart beat complete without error",
+			isCancelled:    false,
+			compactionErr:  nil,
+			expectedStatus: Completed,
+		},
+		{
+			name:           "heart beat stopped due to compaction error",
+			isCancelled:    false,
+			compactionErr:  fmt.Errorf("some compaction failure"),
+			expectedStatus: Pending,
+		},
+	} {
+		t.Run(tcase.name, func(t *testing.T) {
+			ulid0 := ulid.MustNew(uint64(time.Now().UnixMilli()+0), nil)
+			ulid1 := ulid.MustNew(uint64(time.Now().UnixMilli()+1), nil)
+			blocks := []*metadata.Meta{
+				{
+					BlockMeta: tsdb.BlockMeta{
+						ULID: ulid0,
+					},
+				},
+				{
+					BlockMeta: tsdb.BlockMeta{
+						ULID: ulid1,
+					},
+				},
+			}
+			ctx, cancel := context.WithCancel(context.Background())
+			dummyCounter := prometheus.NewCounter(prometheus.CounterOpts{})
+			bkt, _ := cortex_testutil.PrepareFilesystemBucket(t)
+			logger := log.NewNopLogger()
+			errChan := make(chan error, 1)
+			go markBlocksVisitedHeartBeat(ctx, objstore.WithNoopInstr(bkt), logger, blocks, partitionedGroupID, partitionID, compactorID, time.Second, dummyCounter, errChan)
+			time.Sleep(2 * time.Second)
+			if tcase.isCancelled {
+				cancel()
+			} else {
+				errChan <- tcase.compactionErr
+				defer cancel()
+			}
+			time.Sleep(2 * time.Second)
+			for _, meta := range blocks {
+				res, err := ReadBlockVisitMarker(context.Background(), objstore.WithNoopInstr(bkt), logger, meta.ULID.String(), partitionID, dummyCounter)
+				require.NoError(t, err)
+				require.Equal(t, tcase.expectedStatus, res.Status)
+			}
+		})
+	}
+}