Below is a list of common issues that users may run experience during installation, and their proposed solutions.
If the moseq2-model dependency: pyhsmm or pyhsmm-autoregressive failed to install,
the GCC version may not be properly set.
- Ensure acceptable version of gcc is installed:
- Accepted versions: [6.2.0, 7.5.0, gcc-9/g++-9]
which gcc-7 # or `which gcc`- Set the environmental GCC path environment variable:
export CC="$(which gcc-7)"
export CXX="$(which g++-7)"- Reinstall
moseq2-app:
pip install -e .If any of the moseq2 dependencies are missing, simply install the moseq2-app to install the latest
working versions of all the moseq2 tools.
cd moseq2-app/
pip install -e .If the interactive videos are not loading, ensure that the notebook is located in the parent directory of the dataset being extracted/analyzed.