Merge pull request #17713 from boegel/20230413183532_new_pr_SciPy-bundle202302

add patch for scipy 1.10.1 extension in SciPy-bundle 2023.02 to fix broken test

Author: branfosj

easybuild/easyconfigs/s/SciPy-bundle/SciPy-bundle-2023.02-gfbf-2022b.eb

@@ -51,12 +51,14 @@ exts_list = [
         'patches': [
             'scipy-1.10.1_disable-tests.patch',
             'scipy-1.10.1_xfail-aarch64_test_maxiter_worsening.patch',
+            'scipy-1.10.1_fix-lobpcg-test.patch',
         ],
         'checksums': [
             {'scipy-1.10.1.tar.gz': '2cf9dfb80a7b4589ba4c40ce7588986d6d5cebc5457cad2c2880f6bc2d42f3a5'},
             {'scipy-1.10.1_disable-tests.patch': '5d36d416fb7ea9297514c3988d9f506793e39dc4c0daedccf6733c3dd7e3dcc0'},
             {'scipy-1.10.1_xfail-aarch64_test_maxiter_worsening.patch':
              '48177d6af51cf3e3d46aed8425807f0a65a498f7558f475032e0ad846559a23e'},
+            {'scipy-1.10.1_fix-lobpcg-test.patch': 'eb4c576959108df0b1749705e64fe42e79edcf5aa8f6b4d7908f9b136d0d6648'},
         ],
         'enable_slow_tests': True,
         'ignore_test_result': False,

easybuild/easyconfigs/s/SciPy-bundle/scipy-1.10.1_fix-lobpcg-test.patch

@@ -0,0 +1,29 @@
+change test for a warning to filterwarnings since the code may or not issue a warning depending on an arch
+see https://github.com/scipy/scipy/issues/17954 + https://github.com/scipy/scipy/pull/17975
+diff --git a/scipy/sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py b/scipy/sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py
+index afd7a106ea0..87f3756c37d 100644
+--- a/scipy/sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py
++++ b/scipy/sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py
+@@ -255,17 +255,18 @@
+     _check_fiedler(12, 2)
+ 
+ 
+-@pytest.mark.skipif(platform.machine() == 'aarch64',
+-                    reason="issue #15935")
++@pytest.mark.filterwarnings("ignore:Failed at iteration")
++@pytest.mark.filterwarnings("ignore:Exited at iteration")
++@pytest.mark.filterwarnings("ignore:Exited postprocessing")
+ def test_failure_to_run_iterations():
+     """Check that the code exists gracefully without breaking. Issue #10974.
++    The code may or not issue a warning, filtered out. Issue #15935, #17954.
+     """
+     rnd = np.random.RandomState(0)
+     X = rnd.standard_normal((100, 10))
+     A = X @ X.T
+     Q = rnd.standard_normal((X.shape[0], 4))
+-    with pytest.warns(UserWarning, match="Failed at iteration"):
+-        eigenvalues, _ = lobpcg(A, Q, maxiter=40, tol=1e-12)
++    eigenvalues, _ = lobpcg(A, Q, maxiter=40, tol=1e-12)
+     assert(np.max(eigenvalues) > 0)
+ 
+