diff --git a/easybuild/easyconfigs/a/ACT/ACT-18.0.2-Java-11.eb b/easybuild/easyconfigs/a/ACT/ACT-18.0.2-Java-11.eb deleted file mode 100644 index 0ede9d4bbab..00000000000 --- a/easybuild/easyconfigs/a/ACT/ACT-18.0.2-Java-11.eb +++ /dev/null @@ -1,26 +0,0 @@ -easyblock = 'PackedBinary' - -name = 'ACT' -version = '18.0.2' -versionsuffix = '-Java-%(javaver)s' - -homepage = 'http://sanger-pathogens.github.io/Artemis/ACT/' -description = """ ACT is a Java application for displaying pairwise comparisons between two or more DNA sequences. - It can be used to identify and analyse regions of similarity and difference between genomes - and to explore conservation of synteny, in the context of the entire sequences and their annotation. - It can read complete EMBL, GENBANK and GFF entries or sequences in FASTA or raw format. """ - -toolchain = SYSTEM - -source_urls = ['https://github.com/sanger-pathogens/Artemis/releases/download/v%(version)s/'] -sources = ['artemis-unix-release-%(version)s.tar.gz'] -checksums = ['1cb9f36af4c96ae3bde4fa849e01e66c830d4b968867e7842abbab9195b57e60'] - -dependencies = [('Java', '11')] - -sanity_check_paths = { - 'files': ['act', 'art'], - 'dirs': [], -} - -moduleclass = 'bio' diff --git a/easybuild/easyconfigs/a/ACT/ACT-18.0.3-Java-11.eb b/easybuild/easyconfigs/a/ACT/ACT-18.0.3-Java-11.eb deleted file mode 100644 index ba982a15488..00000000000 --- a/easybuild/easyconfigs/a/ACT/ACT-18.0.3-Java-11.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'PackedBinary' - -name = 'ACT' -version = '18.0.3' -versionsuffix = '-Java-%(javaver)s' - -homepage = 'https://sanger-pathogens.github.io/Artemis/ACT/' -description = """ ACT is a Java application for displaying pairwise comparisons between two or more DNA sequences. - It can be used to identify and analyse regions of similarity and difference between genomes - and to explore conservation of synteny, in the context of the entire sequences and their annotation. - It can read complete EMBL, GENBANK and GFF entries or sequences in FASTA or raw format. """ - -toolchain = SYSTEM - -source_urls = ['https://github.com/sanger-pathogens/Artemis/releases/download/v%(version)s/'] -sources = ['artemis-unix-release-%(version)s.tar.gz'] -checksums = ['2603e6daf123c866817fcc22d4577244787349913cebc7acecbcc2e059a8e15c'] - -dependencies = [('Java', '11')] - -sanity_check_paths = { - 'files': ['act', 'art'], - 'dirs': [], -} - -# act -help returns exit-code 1, but it is valid working executable. -# Workaround is to grep phrase from help command output -# https://github.com/sanger-pathogens/Artemis/issues/296 -sanity_check_commands = [ - "act -help | grep -q 'EXAMPLES'" -] - -moduleclass = 'bio' diff --git a/easybuild/easyconfigs/a/Artemis/Artemis-18.0.2-Java-11.eb b/easybuild/easyconfigs/a/Artemis/Artemis-18.0.2-Java-11.eb new file mode 100644 index 00000000000..d851e2aa64b --- /dev/null +++ b/easybuild/easyconfigs/a/Artemis/Artemis-18.0.2-Java-11.eb @@ -0,0 +1,31 @@ +easyblock = 'PackedBinary' + +name = 'Artemis' +version = '18.0.2' +versionsuffix = '-Java-%(javaver)s' + +homepage = 'http://sanger-pathogens.github.io/Artemis/' +description = """The Artemis Software is a set of software tools for genome browsing and annotation. + It includes: Artemis, Artemis Comparison Tool (ACT), BamView and DNAPlotter.""" + +toolchain = SYSTEM + +source_urls = ['https://github.com/sanger-pathogens/%(name)s/releases/download/v%(version)s/'] +sources = ['%(namelower)s-unix-release-%(version)s.tar.gz'] +checksums = ['1cb9f36af4c96ae3bde4fa849e01e66c830d4b968867e7842abbab9195b57e60'] + +dependencies = [('Java', '11')] + +sanity_check_paths = { + 'files': ['act', 'art', 'bamview', 'dnaplotter'], + 'dirs': [], +} + +# act -help returns exit-code 1, but it is valid working executable. +# Workaround is to grep phrase from help command output +# https://github.com/sanger-pathogens/Artemis/issues/296 +sanity_check_commands = [ + "act -help | grep -q 'EXAMPLES'" +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/a/Artemis/Artemis-18.0.3-Java-11.eb b/easybuild/easyconfigs/a/Artemis/Artemis-18.0.3-Java-11.eb new file mode 100644 index 00000000000..58cd4cbcce6 --- /dev/null +++ b/easybuild/easyconfigs/a/Artemis/Artemis-18.0.3-Java-11.eb @@ -0,0 +1,31 @@ +easyblock = 'PackedBinary' + +name = 'Artemis' +version = '18.0.3' +versionsuffix = '-Java-%(javaver)s' + +homepage = 'http://sanger-pathogens.github.io/Artemis/' +description = """The Artemis Software is a set of software tools for genome browsing and annotation. + It includes: Artemis, Artemis Comparison Tool (ACT), BamView and DNAPlotter.""" + +toolchain = SYSTEM + +source_urls = ['https://github.com/sanger-pathogens/%(name)s/releases/download/v%(version)s/'] +sources = ['%(namelower)s-unix-release-%(version)s.tar.gz'] +checksums = ['2603e6daf123c866817fcc22d4577244787349913cebc7acecbcc2e059a8e15c'] + +dependencies = [('Java', '11')] + +sanity_check_paths = { + 'files': ['act', 'art', 'bamview', 'dnaplotter'], + 'dirs': [], +} + +# act -help returns exit-code 1, but it is valid working executable. +# Workaround is to grep phrase from help command output +# https://github.com/sanger-pathogens/Artemis/issues/296 +sanity_check_commands = [ + "act -help | grep -q 'EXAMPLES'" +] + +moduleclass = 'bio'