Fix lint, add ruff exclusions, enhance-docs in build pipeline

- Fix import ordering and remove unused imports in test_pydantic_schema
- Add ruff exclude for generated schema files
- Add pydantic to test deps, IWC Format2 conversion tests
- Use enhance-docs for HTML post-processing (aliases, class rows, types)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

Author: jmchilton

build_schema.sh

@@ -70,20 +70,23 @@ schema-salad-doc \
     --only "https://galaxyproject.org/gxformat2/native_v0_1#NativeGalaxyWorkflow" \
     workflow.yml > "$out"
 
-# Post-process: fix format_version -> format-version and remove artificial class row
-sed -i.bak 's/format_version/format-version/g' "$out"
-python3 -c "
-import re, sys
-html = open('$out').read()
-html = re.sub(r'<div class=\"row responsive-table-row\">\s*\n<div[^>]*><code>class</code></div>\n.*?</div>\n</div>\n', '', html, flags=re.DOTALL)
-open('$out', 'w').write(html)
-"
-rm -f "$out.bak"
-
-# Pydantic models (requires schema-salad-plus-pydantic)
+# Pydantic models and enhanced docs (requires schema-salad-plus-pydantic)
+# enhance-docs handles: pydantic:type overrides, pydantic:alias renames,
+# and removing artificial class rows from documentRoot records.
 SKIP_PYDANTIC=${SKIP_PYDANTIC:-0}
 if [ $SKIP_PYDANTIC -eq 0 ]; then
     cd "${PROJECT_DIRECTORY}"
     schema-salad-plus-pydantic generate schema/v19_09/workflow.yml -o gxformat2/schema/gxformat2.py
     schema-salad-plus-pydantic generate schema/native_v0_1/workflow.yml -o gxformat2/schema/native.py
+    schema-salad-plus-pydantic enhance-docs schema/native_v0_1/workflow.yml "${DIST_DIRECTORY}/native_v0_1.html"
+else
+    # Fallback post-processing without schema-salad-plus-pydantic
+    sed -i.bak 's/format_version/format-version/g' "$out"
+    python3 -c "
+import re
+html = open('$out').read()
+html = re.sub(r'<div class=\"row responsive-table-row\">\s*\n<div[^>]*><code>class</code></div>\n.*?</div>\n</div>\n', '', html, flags=re.DOTALL)
+open('$out', 'w').write(html)
+"
+    rm -f "$out.bak"
 fi

pyproject.toml

@@ -67,6 +67,14 @@ dev = [
     "cwltool>=3.0.20200807132242",
 ]
 
+[tool.ruff]
+exclude = [
+    "gxformat2/schema/v19_09.py",
+    "gxformat2/schema/native_v0_1.py",
+    "gxformat2/schema/gxformat2.py",
+    "gxformat2/schema/native.py",
+]
+
 [tool.black]
 line-length = 120
 extend-exclude = '''

tests/test_pydantic_schema.py

@@ -11,23 +11,16 @@
 import pytest
 
 from gxformat2.export import from_galaxy_native
+from gxformat2.schema.gxformat2 import (
+    GalaxyWorkflow,
+    WorkflowStep,
+)
 from gxformat2.schema.native import (
-    NativeCreatorOrganization,
-    NativeCreatorPerson,
-    NativeFrameComment,
     NativeGalaxyWorkflow,
     NativeInputConnection,
-    NativeMarkdownComment,
     NativePostJobAction,
     NativeStep,
     NativeStepType,
-    NativeTextComment,
-)
-from gxformat2.schema.gxformat2 import (
-    GalaxyWorkflow,
-    WorkflowComment,
-    WorkflowStep,
-    WorkflowStepType,
 )
 from gxformat2.yaml import ordered_load