diff --git a/src/transformers/models/auto/modeling_auto.py b/src/transformers/models/auto/modeling_auto.py
index f7228c078e9e..44d83634d28e 100644
--- a/src/transformers/models/auto/modeling_auto.py
+++ b/src/transformers/models/auto/modeling_auto.py
@@ -1009,10 +1009,12 @@ class _BaseModelWithGenerate(PreTrainedModel, GenerationMixin):
         ("pi0", "PI0ForConditionalGeneration"),
         ("pix2struct", "Pix2StructForConditionalGeneration"),
         ("pp_chart2table", "GotOcr2ForConditionalGeneration"),
+        ("qwen2_5_omni_thinker", "Qwen2_5OmniThinkerForConditionalGeneration"),
         ("qwen2_5_vl", "Qwen2_5_VLForConditionalGeneration"),
         ("qwen2_vl", "Qwen2VLForConditionalGeneration"),
         ("qwen3_5", "Qwen3_5ForConditionalGeneration"),
         ("qwen3_5_moe", "Qwen3_5MoeForConditionalGeneration"),
+        ("qwen3_omni_moe_thinker", "Qwen3OmniMoeThinkerForConditionalGeneration"),
         ("qwen3_vl", "Qwen3VLForConditionalGeneration"),
         ("qwen3_vl_moe", "Qwen3VLMoeForConditionalGeneration"),
         ("shieldgemma2", "Gemma3ForConditionalGeneration"),
diff --git a/utils/check_repo.py b/utils/check_repo.py
index 9c7fb8714dbe..c4b8e44b4dd8 100644
--- a/utils/check_repo.py
+++ b/utils/check_repo.py
@@ -470,7 +470,6 @@
     "PaddleOCRTextModel",  # Building part of bigger (tested) model
     "Qwen2_5OmniTalkerForConditionalGeneration",  # Building part of a bigger model
     "Qwen2_5OmniTalkerModel",  # Building part of a bigger model
-    "Qwen2_5OmniThinkerForConditionalGeneration",  # Building part of a bigger model
     "Qwen2_5OmniThinkerTextModel",  # Building part of a bigger model
     "Qwen2_5OmniToken2WavModel",  # Building part of a bigger model
     "Qwen2_5OmniToken2WavBigVGANModel",  # Building part of a bigger model
@@ -488,7 +487,6 @@
     "Qwen3OmniMoeTalkerCodePredictorModelForConditionalGeneration",  # Building part of a bigger model
     "Qwen3OmniMoeTalkerForConditionalGeneration",  # Building part of a bigger model
     "Qwen3OmniMoeTalkerModel",  # Building part of a bigger model
-    "Qwen3OmniMoeThinkerForConditionalGeneration",  # Building part of a bigger model
     "Qwen3OmniMoeThinkerTextModel",  # Building part of a bigger model
     "Ernie4_5_VLMoeTextModel",  # Building part of a bigger model
     "PeAudioFrameLevelModel",