Node type in swc file mismatch with nodes in cell loaded in Jaxley

[Kartik-Sama]

PFA, a SWC file (attached as a .txt file) containing axonal nodes. However, upon loading this file in Jaxley using the read_swc function, I see no axonal nodes in the cell(cell.base.groups). Upon inspection through cell.xyrz function it appears that some axonal nodes, and some basal dendritic nodes have been labeled as soma nodes in the loaded Jaxley cell.

I wanted to check if anyone else has faced this issue?

cell.base.groups returns

{'soma': array([0, 1, 2, 3]),
'basal': array([ 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24,
25, 26, 27, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45,
46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62,
63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79,
80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95]),
'apical': array([ 4, 5, 6, 7, 28, 29, 30, 31, 96, 97, 98, 99, 100,
101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113,
114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126,
127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139,
140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152,
153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165,
166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178,
179, 180, 181, 182, 183])}

[michaeldeistler]

Hi Kartik,

thanks for raising this, seems like a bug. I'll fix it asap.
Michael