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stacking_val_predict.py
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99 lines (77 loc) · 3.03 KB
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import json
import numpy as np
import pandas as pd
from src.stacking.datasets import load_fname_probs
from src.stacking.predictor import StackPredictor
from src.metrics import LwlrapBase
from src.utils import get_best_model_path
from src import config
STACKING_EXPERIMENT = "stacking_008_fcnet_50013"
EXPERIMENTS = [
'auxiliary_016',
'auxiliary_019',
'corr_noisy_003',
'corr_noisy_004',
'corr_noisy_007',
'corrections_002',
'corrections_003'
]
EXPERIMENT_DIR = config.experiments_dir / STACKING_EXPERIMENT
PREDICTION_DIR = config.predictions_dir / STACKING_EXPERIMENT
DEVICE = 'cuda'
BATCH_SIZE = 256
def pred_val_fold(predictor, fold):
fold_prediction_dir = PREDICTION_DIR / f'fold_{fold}' / 'val'
fold_prediction_dir.mkdir(parents=True, exist_ok=True)
train_folds_df = pd.read_csv(config.train_folds_path)
train_folds_df = train_folds_df[train_folds_df.fold == fold]
fname_lst = []
probs_lst = []
for i, row in train_folds_df.iterrows():
probs = load_fname_probs(EXPERIMENTS, fold, row.fname)
probs_lst.append(probs.mean(axis=0))
fname_lst.append(row.fname)
stack_probs = np.stack(probs_lst, axis=0)
preds = predictor.predict(stack_probs)
probs_df = pd.DataFrame(data=list(preds),
index=fname_lst,
columns=config.classes)
probs_df.index.name = 'fname'
probs_df.to_csv(fold_prediction_dir / 'probs.csv')
def calc_lwlrap_on_val():
probs_df_lst = []
for fold in config.folds:
fold_probs_path = PREDICTION_DIR / f'fold_{fold}' / 'val' / 'probs.csv'
probs_df = pd.read_csv(fold_probs_path)
probs_df.set_index('fname', inplace=True)
probs_df_lst.append(probs_df)
probs_df = pd.concat(probs_df_lst, axis=0)
train_curated_df = pd.read_csv(config.train_curated_csv_path)
lwlrap = LwlrapBase(config.classes)
for i, row in train_curated_df.iterrows():
target = np.zeros(len(config.classes))
for label in row.labels.split(','):
target[config.class2index[label]] = 1.
pred = probs_df.loc[row.fname].values
lwlrap.accumulate(target[np.newaxis], pred[np.newaxis])
result = {
'overall_lwlrap': lwlrap.overall_lwlrap(),
'per_class_lwlrap': {cls: lwl for cls, lwl in zip(config.classes,
lwlrap.per_class_lwlrap())}
}
print(result)
with open(PREDICTION_DIR / 'val_lwlrap.json', 'w') as file:
json.dump(result, file, indent=2)
if __name__ == "__main__":
for fold in config.folds:
print("Predict fold", fold)
fold_dir = EXPERIMENT_DIR / f'fold_{fold}'
model_path = get_best_model_path(fold_dir)
print("Model path", model_path)
predictor = StackPredictor(model_path,
BATCH_SIZE,
device=DEVICE)
print("Val predict")
pred_val_fold(predictor, fold)
print("Calculate lwlrap metric on cv")
calc_lwlrap_on_val()