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babayagaofficialbabayagaofficial
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feat: Created a style file which can be loaded into cytoscape. This will colour nodes and label edges like in the html visualisations plasnet produces by default. To be used in conjugtion with json files directly in cytoscape. Does not include a layout. Is not outputted by plasnet at any point, as it doesn't change between datasets and only needs to be loaded into cytoscape once.
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‎plasnet/ext/templates/plasnet_style.xml‎

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<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
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<vizmap id="VizMap-2024_06_28-10_57" documentVersion="3.1">
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<visualStyle name="plasnet">
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<network>
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<visualProperty default="true" name="NETWORK_NODE_SELECTION"/>
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<visualProperty default="550.0" name="NETWORK_WIDTH"/>
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<visualProperty default="0.0" name="NETWORK_DEPTH"/>
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<visualProperty default="false" name="NETWORK_ANNOTATION_SELECTION"/>
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<visualProperty default="false" name="NETWORK_NODE_LABEL_SELECTION"/>
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<visualProperty default="400.0" name="NETWORK_HEIGHT"/>
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<visualProperty default="1.0" name="NETWORK_SCALE_FACTOR"/>
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<visualProperty default="0.0" name="NETWORK_CENTER_X_LOCATION"/>
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<visualProperty default="false" name="NETWORK_FORCE_HIGH_DETAIL"/>
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<visualProperty default="0.0" name="NETWORK_CENTER_Y_LOCATION"/>
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<visualProperty default="0.0" name="NETWORK_CENTER_Z_LOCATION"/>
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<visualProperty default="" name="NETWORK_TITLE"/>
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<visualProperty default="#FFFFFF" name="NETWORK_BACKGROUND_PAINT"/>
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<visualProperty default="true" name="NETWORK_EDGE_SELECTION"/>
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<visualProperty default="550.0" name="NETWORK_SIZE"/>
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</network>
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<node>
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<dependency value="true" name="nodeCustomGraphicsSizeSync"/>
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<dependency value="false" name="nodeSizeLocked"/>
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<visualProperty default="12" name="NODE_LABEL_FONT_SIZE"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_3"/>
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<visualProperty default="true" name="NODE_NESTED_NETWORK_IMAGE_VISIBLE"/>
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<visualProperty default="" name="NODE_LABEL">
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<passthroughMapping attributeName="name" attributeType="string"/>
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</visualProperty>
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<visualProperty default="50.0" name="NODE_CUSTOMGRAPHICS_SIZE_8"/>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_4"/>
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<visualProperty default="35.0" name="NODE_HEIGHT"/>
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<visualProperty default="DefaultVisualizableVisualProperty(id=NODE_CUSTOMPAINT_8, name=Node Custom Paint 8)" name="NODE_CUSTOMPAINT_8"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_7"/>
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<visualProperty default="50.0" name="NODE_CUSTOMGRAPHICS_SIZE_4"/>
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<visualProperty default="SOLID" name="NODE_BORDER_STROKE"/>
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<visualProperty default="0.0" name="NODE_Y_LOCATION"/>
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<visualProperty default="false" name="NODE_SELECTED"/>
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<visualProperty default="DefaultVisualizableVisualProperty(id=NODE_CUSTOMPAINT_4, name=Node Custom Paint 4)" name="NODE_CUSTOMPAINT_4"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_8"/>
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<visualProperty default="DefaultVisualizableVisualProperty(id=NODE_CUSTOMPAINT_9, name=Node Custom Paint 9)" name="NODE_CUSTOMPAINT_9"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_2"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_LABEL_POSITION"/>
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<visualProperty default="255" name="NODE_LABEL_BACKGROUND_TRANSPARENCY"/>
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<visualProperty default="50.0" name="NODE_CUSTOMGRAPHICS_SIZE_6"/>
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<visualProperty default="DefaultVisualizableVisualProperty(id=NODE_CUSTOMPAINT_1, name=Node Custom Paint 1)" name="NODE_CUSTOMPAINT_1"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_4"/>
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<visualProperty default="255" name="NODE_LABEL_TRANSPARENCY"/>
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<visualProperty default="50.0" name="NODE_CUSTOMGRAPHICS_SIZE_3"/>
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<visualProperty default="DefaultVisualizableVisualProperty(id=NODE_CUSTOMPAINT_2, name=Node Custom Paint 2)" name="NODE_CUSTOMPAINT_2"/>
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<visualProperty default="50.0" name="NODE_CUSTOMGRAPHICS_SIZE_5"/>
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<visualProperty default="DefaultVisualizableVisualProperty(id=NODE_CUSTOMPAINT_3, name=Node Custom Paint 3)" name="NODE_CUSTOMPAINT_3"/>
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<visualProperty default="0.0" name="NODE_LABEL_ROTATION"/>
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<visualProperty default="0.0" name="NODE_DEPTH"/>
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<visualProperty default="#B6B6B6" name="NODE_LABEL_BACKGROUND_COLOR"/>
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<visualProperty default="#FFFF00" name="NODE_SELECTED_PAINT"/>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_5"/>
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<visualProperty default="50.0" name="NODE_CUSTOMGRAPHICS_SIZE_2"/>
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<visualProperty default="0.0" name="NODE_Z_LOCATION"/>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_3"/>
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<visualProperty default="ROUND_RECTANGLE" name="COMPOUND_NODE_SHAPE"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_9"/>
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<visualProperty default="NONE" name="NODE_LABEL_BACKGROUND_SHAPE"/>
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<visualProperty default="#000000" name="NODE_LABEL_COLOR"/>
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<visualProperty default="#89D0F5" name="NODE_FILL_COLOR">
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<passthroughMapping attributeName="color" attributeType="string"/>
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</visualProperty>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_9"/>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_2"/>
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<visualProperty default="200.0" name="NODE_LABEL_WIDTH"/>
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<visualProperty default="50.0" name="NODE_CUSTOMGRAPHICS_SIZE_9"/>
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<visualProperty default="DefaultVisualizableVisualProperty(id=NODE_CUSTOMPAINT_5, name=Node Custom Paint 5)" name="NODE_CUSTOMPAINT_5"/>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_6"/>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_7"/>
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<visualProperty default="0.0" name="NODE_X_LOCATION"/>
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<visualProperty default="0.0" name="NODE_BORDER_WIDTH"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_1"/>
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<visualProperty default="ROUND_RECTANGLE" name="NODE_SHAPE">
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<discreteMapping attributeName="is_hub" attributeType="boolean">
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<discreteMappingEntry attributeValue="false" value="ELLIPSE"/>
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<discreteMappingEntry attributeValue="true" value="DIAMOND"/>
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</discreteMapping>
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</visualProperty>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_8"/>
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<visualProperty default="255" name="NODE_TRANSPARENCY"/>
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<visualProperty default="DefaultVisualizableVisualProperty(id=NODE_CUSTOMPAINT_7, name=Node Custom Paint 7)" name="NODE_CUSTOMPAINT_7"/>
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<visualProperty default="true" name="NODE_VISIBLE"/>
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<visualProperty default="75.0" name="NODE_WIDTH"/>
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<visualProperty default="255" name="NODE_BORDER_TRANSPARENCY"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_5"/>
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<visualProperty default="50.0" name="NODE_CUSTOMGRAPHICS_SIZE_7"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_6"/>
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<visualProperty default="DefaultVisualizableVisualProperty(id=NODE_CUSTOMPAINT_6, name=Node Custom Paint 6)" name="NODE_CUSTOMPAINT_6"/>
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<visualProperty default="50.0" name="NODE_CUSTOMGRAPHICS_SIZE_1"/>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_1"/>
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<visualProperty default="#1E90FF" name="NODE_PAINT"/>
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<visualProperty default="10.0" name="COMPOUND_NODE_PADDING"/>
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<visualProperty default="35.0" name="NODE_SIZE"/>
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<visualProperty default="SansSerif.plain,plain,12" name="NODE_LABEL_FONT_FACE"/>
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<visualProperty default="" name="NODE_TOOLTIP"/>
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<visualProperty default="#CCCCCC" name="NODE_BORDER_PAINT"/>
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</node>
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<edge>
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<dependency value="false" name="arrowColorMatchesEdge"/>
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<visualProperty default="" name="EDGE_BEND"/>
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<visualProperty default="0.5" name="EDGE_STACKING_DENSITY"/>
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<visualProperty default="#FFFF00" name="EDGE_TARGET_ARROW_SELECTED_PAINT"/>
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<visualProperty default="NONE" name="EDGE_SOURCE_ARROW_SHAPE"/>
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<visualProperty default="6.0" name="EDGE_TARGET_ARROW_SIZE"/>
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<visualProperty default="0.0" name="EDGE_Z_ORDER"/>
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<visualProperty default="SOLID" name="EDGE_LINE_TYPE"/>
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<visualProperty default="false" name="EDGE_SELECTED"/>
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<visualProperty default="AUTO_BEND" name="EDGE_STACKING"/>
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<visualProperty default="6.0" name="EDGE_SOURCE_ARROW_SIZE"/>
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<visualProperty default="2.0" name="EDGE_WIDTH"/>
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<visualProperty default="Dialog.plain,plain,10" name="EDGE_LABEL_FONT_FACE"/>
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<visualProperty default="#000000" name="EDGE_TARGET_ARROW_UNSELECTED_PAINT"/>
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<visualProperty default="false" name="EDGE_LABEL_AUTOROTATE"/>
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<visualProperty default="#404040" name="EDGE_UNSELECTED_PAINT"/>
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<visualProperty default="true" name="EDGE_VISIBLE"/>
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<visualProperty default="0.0" name="EDGE_LABEL_ROTATION"/>
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<visualProperty default="#FF0000" name="EDGE_STROKE_SELECTED_PAINT"/>
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<visualProperty default="C,C,c,0.00,0.00" name="EDGE_LABEL_POSITION"/>
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<visualProperty default="255" name="EDGE_TRANSPARENCY"/>
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<visualProperty default="#FF0000" name="EDGE_SELECTED_PAINT"/>
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<visualProperty default="" name="EDGE_TOOLTIP"/>
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<visualProperty default="255" name="EDGE_LABEL_TRANSPARENCY"/>
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<visualProperty default="true" name="EDGE_CURVED"/>
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<visualProperty default="" name="EDGE_LABEL">
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<passthroughMapping attributeName="d_lbl" attributeType="string"/>
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</visualProperty>
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<visualProperty default="#FFFF00" name="EDGE_SOURCE_ARROW_SELECTED_PAINT"/>
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<visualProperty default="#000000" name="EDGE_SOURCE_ARROW_UNSELECTED_PAINT"/>
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<visualProperty default="NONE" name="EDGE_TARGET_ARROW_SHAPE"/>
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<visualProperty default="#B6B6B6" name="EDGE_LABEL_BACKGROUND_COLOR"/>
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<visualProperty default="NONE" name="EDGE_LABEL_BACKGROUND_SHAPE"/>
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<visualProperty default="#323232" name="EDGE_PAINT"/>
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<visualProperty default="255" name="EDGE_LABEL_BACKGROUND_TRANSPARENCY"/>
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<visualProperty default="#000000" name="EDGE_LABEL_COLOR"/>
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<visualProperty default="200.0" name="EDGE_LABEL_WIDTH"/>
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<visualProperty default="#848484" name="EDGE_STROKE_UNSELECTED_PAINT"/>
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<visualProperty default="10" name="EDGE_LABEL_FONT_SIZE"/>
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</edge>
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</visualStyle>
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</vizmap>

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