Merge pull request #709 from nf-core/fixdev

Fix issues in dev

Author: ramprasadn

.github/workflows/nf-test.yml

@@ -37,6 +37,7 @@ jobs:
     runs-on: # use self-hosted runners
       - runs-on=$-nf-test-changes
       - runner=4cpu-linux-x64
+      - disk=large
     outputs:
       shard: ${{ steps.set-shards.outputs.shard }}
       total_shards: ${{ steps.set-shards.outputs.total_shards }}

tests/default.nf.test.snap

@@ -341,6 +341,15 @@
                 "TABIX_TABIX": {
                     "tabix": 1.2
                 },
+                "TABIX_TABIX_MERGE": {
+                    "tabix": 1.2
+                },
+                "TABIX_TABIX_MT2": {
+                    "tabix": 1.2
+                },
+                "TABIX_TABIX_MT": {
+                    "tabix": 1.2
+                },
                 "TABIX_VEP": {
                     "tabix": 1.2
                 },
@@ -366,7 +375,7 @@
                     "vcfanno": "0.3.5"
                 },
                 "Workflow": {
-                    "nf-core/raredisease": "v2.6.0dev"
+                    "nf-core/raredisease": "v2.6.0"
                 },
                 "ZIP_TABIX_ROHCALL": {
                     "tabix": 1.2
@@ -569,6 +578,6 @@
             "nf-test": "0.9.2",
             "nextflow": "25.04.3"
         },
-        "timestamp": "2025-06-11T20:29:48.369992294"
+        "timestamp": "2025-06-16T15:08:20.089341908"
     }
 }

tests/test_bam.nf.test.snap

@@ -322,6 +322,15 @@
                 "TABIX_TABIX": {
                     "tabix": 1.2
                 },
+                "TABIX_TABIX_MERGE": {
+                    "tabix": 1.2
+                },
+                "TABIX_TABIX_MT2": {
+                    "tabix": 1.2
+                },
+                "TABIX_TABIX_MT": {
+                    "tabix": 1.2
+                },
                 "TABIX_VEP": {
                     "tabix": 1.2
                 },
@@ -347,7 +356,7 @@
                     "vcfanno": "0.3.5"
                 },
                 "Workflow": {
-                    "nf-core/raredisease": "v2.6.0dev"
+                    "nf-core/raredisease": "v2.6.0"
                 },
                 "ZIP_TABIX_ROHCALL": {
                     "tabix": 1.2
@@ -534,6 +543,6 @@
             "nf-test": "0.9.2",
             "nextflow": "25.04.3"
         },
-        "timestamp": "2025-06-11T16:17:56.744454194"
+        "timestamp": "2025-06-16T15:11:10.063786271"
     }
 }

tests/test_singleton.nf.test.snap

@@ -329,6 +329,15 @@
                 "TABIX_TABIX": {
                     "tabix": 1.2
                 },
+                "TABIX_TABIX_MERGE": {
+                    "tabix": 1.2
+                },
+                "TABIX_TABIX_MT2": {
+                    "tabix": 1.2
+                },
+                "TABIX_TABIX_MT": {
+                    "tabix": 1.2
+                },
                 "TABIX_VEP": {
                     "tabix": 1.2
                 },
@@ -348,7 +357,7 @@
                     "vcfanno": "0.3.5"
                 },
                 "Workflow": {
-                    "nf-core/raredisease": "v2.6.0dev"
+                    "nf-core/raredisease": "v2.6.0"
                 },
                 "ZIP_TABIX_ROHCALL": {
                     "tabix": 1.2
@@ -457,6 +466,6 @@
             "nf-test": "0.9.2",
             "nextflow": "25.04.3"
         },
-        "timestamp": "2025-06-11T20:44:39.735905645"
+        "timestamp": "2025-06-16T15:14:25.756733004"
     }
 }