Merge pull request #320 from nf-core/release-2.6.0

Bump version to 2.6.0

Author: grst

.github/workflows/download_pipeline.yml

@@ -27,6 +27,9 @@ jobs:
   download:
     runs-on: ubuntu-latest
     steps:
+      - name: Disk space cleanup
+        uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1
+
       - name: Install Nextflow
         uses: nf-core/setup-nextflow@v1
 

CHANGELOG.md

@@ -3,16 +3,17 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## v2.6.0dev - [date]
+## v2.6.0 - 2024-04-16
 
+- Update cellranger to v8.0.0 ([#317](https://github.com/nf-core/scrnaseq/pull/317))
 - Change from pytests to nf-test ([#291](https://github.com/nf-core/scrnaseq/pull/291))
 - Update template to v2.13.1 ([#309](https://github.com/nf-core/scrnaseq/pull/309))
 - Update to kallisto|bustools v0.28.2 ([#294](https://github.com/nf-core/scrnaseq/pull/294))
 - Fix cellrangerarc matrix conversions and protocol selection ([#300](https://github.com/nf-core/scrnaseq/pull/300))
 - Add new emptydrops calling module ([#301](https://github.com/nf-core/scrnaseq/pull/301))
 - Update cellranger modules to latest version ([[#316](https://github.com/nf-core/scrnaseq/issues/316)])
 
-## v2.5.1
+## v2.5.1 - 2024-01-23
 
 - Template update to v2.12 ([#298](https://github.com/nf-core/scrnaseq/pull/298)).
 - Fix that cellranger workflow couldn't be run and enable CI for this workflow ([#288](https://github.com/nf-core/scrnaseq/pull/288)).

assets/multiqc_config.yml

@@ -1,7 +1,7 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/scrnaseq/tree/dev" target="_blank">nf-core/scrnaseq</a>
+  This report has been generated by the <a href="https://github.com/nf-core/scrnaseq/releases/tag/2.6.0" target="_blank">nf-core/scrnaseq</a>
   analysis pipeline. For information about how to interpret these results, please see the
-  <a href="https://nf-co.re/scrnaseq/dev/docs/output" target="_blank">documentation</a>.
+  <a href="https://nf-co.re/scrnaseq/2.6.0/docs/output" target="_blank">documentation</a>.
 report_section_order:
   "nf-core-scrnaseq-methods-description":
     order: -1000

nextflow.config

@@ -282,7 +282,7 @@ manifest {
     description     = """Pipeline for processing 10x Genomics single cell rnaseq data"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version         = '2.6.0dev'
+    version         = '2.6.0'
     doi             = '10.5281/zenodo.3568187'
 }