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    46 repositories

    • EpiModelCOVID

      Public
      Network-Based Epidemic Modeling of Transmission Dynamics for SARS-CoV-2
      R
      •3•10•1•0•Updated Jan 15, 2026Jan 15, 2026

    • EpiModel

      Public
      Mathematical Modeling of Infectious Disease Dynamics
      network-graphagent-based-modelingepidemiologyepidemicsinfectious-diseases
      R
      •
      GNU General Public License v3.0
      •60•263•35•2•Updated Nov 20, 2025Nov 20, 2025

    • EpiModelHIV-Template

      Public template
      Template repository for EpiModelHIV Projects
      R
      •2•3•7•0•Updated Nov 20, 2025Nov 20, 2025

    • slurmworkflow

      Public
      R
      •
      Other
      •0•2•10•0•Updated Sep 18, 2025Sep 18, 2025

    • COVID-GlobalMix

      Public
      This is a repository for the analyses of network model for COVID-GlobalMix
      R
      •
      MIT License
      •0•1•0•0•Updated Sep 11, 2025Sep 11, 2025

    • swfcalib

      Public
      R
      •
      Other
      •0•1•19•0•Updated Jul 7, 2025Jul 7, 2025

    • ARTnet

      Public
      Network and Epidemic Parameterization with the ARTnet Study Data
      R
      •5•10•1•0•Updated Apr 30, 2025Apr 30, 2025

    • EpiModelHPC

      Public
      High-Performance Computing Extensions for EpiModel
      R
      •2•6•3•0•Updated Apr 16, 2025Apr 16, 2025

    • EventDrivenPrEP

      Public
      Modeling the Potential Impact of Event-Driven PrEP
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 21, 2025Mar 21, 2025

    • EpiModelHIV

      Public
      Network Models of HIV Transmission Dynamics among MSM and Heterosexuals
      network-graphagent-based-modelingepidemiologyhivmathematical-modellinghiv-transmission-dynamicsstatnet
      R
      •
      GNU General Public License v3.0
      •14•25•0•0•Updated Mar 21, 2025Mar 21, 2025

    • networkLite

      Public
      An Simplified Implementation of the network Package Functionality
      R
      •
      GNU General Public License v3.0
      •1•3•1•0•Updated Mar 7, 2025Mar 7, 2025

    • EpiModel-Gallery

      Public
      Gallery of Network-Based Epidemic Model Templates for EpiModel
      R
      •
      MIT License
      •30•55•9•0•Updated Oct 18, 2024Oct 18, 2024

    • COVID-Vax-Decisions

      Public
      Network Models of SARS-CoV-2 Transmission Coupled with Social-Psychological Models for Vaccination Decision-Making
      R
      •
      MIT License
      •0•1•0•0•Updated Oct 10, 2024Oct 10, 2024

    • StigmaDepressionHIV

      Public
      R
      •0•1•0•1•Updated Aug 8, 2024Aug 8, 2024

    • EpiModel-Utilities

      Public
      EpiModel related software not housed anywhere else
      R
      •0•1•0•0•Updated Jul 4, 2024Jul 4, 2024

    • slurmworkflow_tester

      Public template
      R
      •0•2•0•0•Updated Jun 10, 2024Jun 10, 2024

    • PrEP-HIV-Sorting

      Public
      An analysis of population-level sexual mixing by diagnosed HIV status and pre-exposure prophylaxis use among men who have sex with men in the United States.
      R
      •0•3•0•0•Updated Jun 5, 2024Jun 5, 2024

    • PartnerServiceYr3

      Public
      Modeling Expanded HIV Partner Services Interventions for MSM
      R
      •
      GNU General Public License v3.0
      •0•0•0•1•Updated Feb 7, 2024Feb 7, 2024

    • EpiModeling

      Public
      Tutorials for Using the EpiModel Software Platform for Research
      R
      •2•5•13•0•Updated Nov 27, 2023Nov 27, 2023

    • PAFGuidelines

      Public
      Population Attributable Fraction of STI Screening Interventions on HIV Incidence
      HTML
      •0•1•0•0•Updated Jan 17, 2023Jan 17, 2023

    • PrEPGuidelines

      Public
      Impact of CDC’s HIV Preexposure Prophylaxis Guidelines among MSM in the United States
      R
      •2•2•0•0•Updated Dec 8, 2022Dec 8, 2022

    • Mean-Degree-Analysis

      Public
      Comparing mean degree measurement methods in sexual networks of men who have sex with men
      R
      •0•0•0•0•Updated Oct 12, 2022Oct 12, 2022

    • NetJail

      Public
      Fulton County Jail Network Analysis and Modeling
      R
      •0•0•0•0•Updated Sep 26, 2022Sep 26, 2022

    • PrEPCommunityLevelBehaviors

      Public
      Correlations Between Community-Level HIV Preexposure Prophylaxis Coverage and Individual-Level Sexual Behaviors
      R
      •0•0•0•0•Updated Jul 26, 2022Jul 26, 2022

    • SexualDistancing

      Public
      Opportunities for HIV/STI Control During Sexual Distancing of the COVID-19 Global Pandemic
      R
      •
      GNU General Public License v3.0
      •2•2•2•0•Updated Jul 7, 2022Jul 7, 2022

    • CombPrevNet

      Public
      The Role of HIV Partner Services in the Modern Biomedical HIV Prevention Era
      R
      •
      GNU General Public License v3.0
      •0•2•1•0•Updated Jun 24, 2022Jun 24, 2022

    • CombPrev

      Public
      Combination HIV Prevention among Atlanta MSM
      Shell
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated May 18, 2022May 18, 2022

    • COVID-CruiseShip

      Public
      Network Model of COVID-19 on Cruise Ships
      Shell
      •
      GNU General Public License v3.0
      •3•9•1•0•Updated Apr 15, 2022Apr 15, 2022

    • PrEP-CEA

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 21, 2021Jul 21, 2021

    • injectable-prep

      Public
      A Mathematical Model of Long-Acting Injectable and Daily-Oral Pre-Exposure Prophylaxis
      Shell
      •
      MIT License
      •0•4•1•0•Updated Jul 16, 2021Jul 16, 2021