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    • Transformers for Clinical NLP
      Python
      1725257Updated Jul 25, 2025Jul 25, 2025
    • Scripts to manipulate data sources for the upcoming shared task on clinical negation detection and time expression parsing
      Python
      3862Updated Jul 8, 2025Jul 8, 2025
    • Detecting primary outcome switching in clinical trials using LLMs
      Python
      0000Updated Jun 5, 2025Jun 5, 2025
    • thymedata

      Public
      This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting useful temporal relations from the clinical narrative.
      11100Updated May 21, 2025May 21, 2025
    • Python
      12000Updated May 9, 2025May 9, 2025
    • Python
      2710Updated Feb 21, 2025Feb 21, 2025
    • Benchmark Corpus for Medical Device Adverse Event Detection (MDR corpus)
      0000Updated Feb 6, 2025Feb 6, 2025
    • Python
      5000Updated Nov 19, 2024Nov 19, 2024
    • Python
      0100Updated Sep 30, 2024Sep 30, 2024
    • Python
      1582Updated Jul 10, 2024Jul 10, 2024
    • Bluespec
      2540Updated May 9, 2024May 9, 2024
    • Quick repo to get setup running cTAKES REST server and making calls
      Python
      4610Updated Apr 6, 2024Apr 6, 2024
    • A framework for few-shot evaluation of autoregressive language models.
      Python
      2.6k000Updated Jan 8, 2024Jan 8, 2024
    • Python
      0000Updated Sep 25, 2023Sep 25, 2023
    • Python
      0100Updated Aug 24, 2023Aug 24, 2023
    • Philter with surrogates
      Python
      0000Updated Jun 13, 2023Jun 13, 2023
    • End to End System for Extracting Radiotherapy Events, Based on Transformers for Clinical NLP v0.3.0
      Python
      17100Updated Apr 3, 2023Apr 3, 2023
    • Open source clinical text de-identification
      Python
      58000Updated Feb 23, 2023Feb 23, 2023
    • Example physician notes for testing cTAKES
      Python
      0200Updated Oct 7, 2022Oct 7, 2022
    • Bluespec
      2000Updated Aug 24, 2022Aug 24, 2022
    • Python suite to construct benchmark machine learning datasets from the MIMIC-III 💊 clinical database.
      Python
      339000Updated Apr 28, 2022Apr 28, 2022
    • Python
      1000Updated Mar 7, 2022Mar 7, 2022
    • Social media drug name extration and normalization sharetask, first place in SMMH21 | Paper: https://arxiv.org/abs/2111.13726
      Python
      0100Updated Dec 8, 2021Dec 8, 2021
    • Repository to transform the MIMIC-III dataset into a flat hierarchy FHIR format
      Jupyter Notebook
      4000Updated Nov 10, 2021Nov 10, 2021
    • Python
      0100Updated Oct 22, 2021Oct 22, 2021
    • Concept Normalization using Context Information
      Python
      1100Updated Sep 7, 2021Sep 7, 2021
    • 0000Updated Mar 26, 2021Mar 26, 2021
    • anafora

      Public
      Anafora is a web-based raw text annotation tool
      JavaScript
      55000Updated Feb 26, 2021Feb 26, 2021
    • eConsult

      Public
      Python
      0000Updated Jan 30, 2021Jan 30, 2021
    • 🤗Transformers: State-of-the-art Natural Language Processing for Pytorch and TensorFlow 2.0.
      Python
      30k000Updated Nov 11, 2020Nov 11, 2020