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    79 repositories

    • distributions

      Public
      Makefile
      •
      BSD 3-Clause "New" or "Revised" License
      •8•5•8•8•Updated Sep 30, 2025Sep 30, 2025

    • library

      Public
      A website for sharing QIIME 2 Plugins
      Svelte
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•3•1•Updated Sep 30, 2025Sep 30, 2025

    • q2view

      Public
      A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •3•1•2•2•Updated Sep 29, 2025Sep 29, 2025

    • qiime2

      Public
      Source for the QIIME 2 Framework (Q2F).
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •257•514•67•11•Updated Sep 26, 2025Sep 26, 2025

    • q2doc

      Public
      A MyST executable plugin for documenting QIIME 2 plugins.
      Python
      •
      Other
      •1•0•5•0•Updated Sep 25, 2025Sep 25, 2025

    • q2-demux

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •22•1•9•1•Updated Sep 25, 2025Sep 25, 2025

    • q2-composition

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •27•6•6•1•Updated Sep 25, 2025Sep 25, 2025

    • library-catalog

      Public
      Stores a list of the repos that are included in the QIIME 2 library
      BSD 3-Clause "New" or "Revised" License
      •8•0•1•2•Updated Sep 22, 2025Sep 22, 2025

    • q2cli

      Public
      Command line interface for QIIME 2
      hacktoberfestq2interface
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •27•19•12•2•Updated Sep 18, 2025Sep 18, 2025

    • q2-diversity

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •44•3•45•2•Updated Sep 18, 2025Sep 18, 2025

    • q2-taxa

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •29•3•43•0•Updated Sep 18, 2025Sep 18, 2025

    • q2-vizard

      Public
      The first choice of wizard lizards for interactive, generalized microbiome data visualization!
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •12•1•4•1•Updated Sep 18, 2025Sep 18, 2025

    • q2-dada2

      Public
      QIIME 2 plugin wrapping DADA2
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •38•21•11•0•Updated Sep 11, 2025Sep 11, 2025

    • q2-mystery-stew

      Public
      This plugin exists to define integration tests between interfaces and the framework.
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•0•0•0•Updated Sep 8, 2025Sep 8, 2025

    • q2-types

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •43•17•27•4•Updated Sep 8, 2025Sep 8, 2025

    • q2-phylogeny

      Public
      Phylogenetic reconstruction, and operations on phylogenetic trees.
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •19•4•2•0•Updated Sep 4, 2025Sep 4, 2025

    • q2-sample-classifier

      Public
      QIIME 2 plugin for machine learning prediction of sample data.
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •34•6•15•0•Updated Aug 27, 2025Aug 27, 2025

    • q2-longitudinal

      Public
      QIIME 2 plugin for paired sample comparisons
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•9•28•1•Updated Aug 27, 2025Aug 27, 2025

    • q2-stats

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •9•1•4•0•Updated Aug 27, 2025Aug 27, 2025

    • q2-quality-control

      Public
      A QIIME 2 plugin for quality control of sequence and feature data
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •16•4•7•0•Updated Aug 27, 2025Aug 27, 2025

    • q2-emperor

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •21•1•4•0•Updated Aug 27, 2025Aug 27, 2025

    • q2-deblur

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •20•3•7•1•Updated Aug 27, 2025Aug 27, 2025

    • q2-cutadapt

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •18•4•4•1•Updated Aug 27, 2025Aug 27, 2025

    • q2-feature-classifier

      Public
      QIIME 2 plugin supporting taxonomic classification
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •39•19•9•1•Updated Aug 27, 2025Aug 27, 2025

    • q2-metadata

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •18•3•6•0•Updated Aug 26, 2025Aug 26, 2025

    • q2templates

      Public
      Design template package for QIIME 2 Plugins
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •15•4•0•1•Updated Aug 26, 2025Aug 26, 2025

    • action-library-packaging

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•0•0•0•Updated Aug 25, 2025Aug 25, 2025

    • q2-diversity-lib

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •12•0•6•0•Updated Aug 12, 2025Aug 12, 2025

    • q2-feature-table

      Public
      QIIME 2 plugin supporting operations on feature tables.
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •40•2•22•1•Updated Aug 5, 2025Aug 5, 2025

    • amplicon-docs

      Public
      Source for QIIME 2 amplicon documentation.
      Makefile
      •0•1•6•0•Updated Jul 21, 2025Jul 21, 2025