fix and supress some test warnings #16531

Job	Run time
detect ci trigger	2s
Event File	2s
ubuntu-latest py3.10	8m 38s
ubuntu-latest py3.13	9m 17s
macos-latest py3.10	6m 34s
macos-latest py3.13	7m 52s
windows-latest py3.10	15m 46s
windows-latest py3.13	16m 57s
ubuntu-latest py3.10 bare-minimum	1m 45s
ubuntu-latest py3.10 min-all-deps	7m 43s
ubuntu-latest py3.13 all-but-numba	7m 16s
ubuntu-latest py3.12 all-but-dask	6m 4s
ubuntu-latest py3.13 flaky	1m 35s
ubuntu-latest py3.10 mypy	2m 57s
ubuntu-latest py3.13 mypy	2m 58s
	1h 35m 26s

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