move to conda

ocefpaf · ocefpaf · commit d27183046955 · 2020-11-28T21:06:33.000-03:00
diff --git a/.appveyor.yml b/.appveyor.yml
diff --git a/.github/workflows/test_code.yml b/.github/workflows/test_code.yml
@@ -8,56 +8,48 @@ on:
     branches:
     - master
 
-env:
-  MAMBA_ROOT_PREFIX: $HOME/micromamba
-  MAMBA_EXE: $(pwd)/micromamba
-
 jobs:
   run:
-    #  change to Linux when we fix micromamba
-    runs-on: macos-latest
+    runs-on: ${{ matrix.os }}
     strategy:
-      fail-fast: false
       matrix:
+        os: [ubuntu-latest, windows-latest]
         python-version: [3.6, 3.9]
 
     steps:
     - uses: actions/checkout@v2
 
-    - name: Install micromamba
-      shell: bash -l {0}
-      run: |
-        wget -qO- https://micromamba.snakepit.net/api/micromamba/osx-64/latest | tar -xvj bin/micromamba
-        mv bin/micromamba ./micromamba
-        ./micromamba shell init -s bash -p $HOME/micromamba
-        mkdir -p $HOME/micromamba/pkgs/
-
-    - name: Mamba create env
-      shell: bash -l {0}
-      run: |
-        . $MAMBA_ROOT_PREFIX/etc/profile.d/mamba.sh
-        ./micromamba create --yes --name TEST python=${{ matrix.python-version }} pip --file requirements.txt --file requirements-dev.txt --channel conda-forge --strict-channel-priority
+    - name: Setup Conda
+      uses: s-weigand/setup-conda@v1
+      with:
+        activate-conda: false
+        conda-channels: conda-forge
 
-    - name: Install folium
+    - name: Python ${{ matrix.python-version }}
       shell: bash -l {0}
       run: |
-        $MAMBA_ROOT_PREFIX/envs/TEST/bin/pip install -e . --no-deps --force-reinstall
+        conda create --yes --name TEST python=${{ matrix.python-version }} pip --file requirements.txt --file requirements-dev.txt --channel conda-forge --strict-channel-priority
+        source activate TEST
+        pip install -e . --no-deps --force-reinstall
 
     - name: Tarball tests
       shell: bash -l {0}
       run: |
-        $MAMBA_ROOT_PREFIX/envs/TEST/bin/pip wheel . -w dist --no-deps
-        $MAMBA_ROOT_PREFIX/envs/TEST/bin/check-manifest --verbose
-        $MAMBA_ROOT_PREFIX/envs/TEST/bin/twine check dist/*
+        source activate TEST
+        pip wheel . -w dist --no-deps
+        check-manifest --verbose
+        twine check dist/*
 
     - name: Tests
       shell: bash -l {0}
       run: |
-        $MAMBA_ROOT_PREFIX/envs/TEST/bin/pytest -vv --ignore=tests/selenium
+        source activate TEST
+        pytest -vv --ignore=tests/selenium
 
     - name: Tests with latest branca
       shell: bash -l {0}
       run: |
-        ./micromamba remove branca --yes
-        $MAMBA_ROOT_PREFIX/envs/TEST/bin/pip install git+https://github.com/python-visualization/branca.git
-        $MAMBA_ROOT_PREFIX/envs/TEST/bin/pytest -vv --ignore=tests/selenium
+        source activate TEST
+        conda remove branca --yes
+        pip install git+https://github.com/python-visualization/branca.git
+        pytest -vv --ignore=tests/selenium
diff --git a/.github/workflows/test_code_notebooks.yml b/.github/workflows/test_code_notebooks.yml
@@ -8,38 +8,28 @@ on:
     branches:
     - master
 
-env:
-  MAMBA_ROOT_PREFIX: $HOME/micromamba
-  MAMBA_EXE: $(pwd)/micromamba
-
 jobs:
   run:
-    #  change to Linux when we fix micromamba
-    runs-on: macos-latest
+  runs-on: ubuntu-latest
 
     steps:
     - uses: actions/checkout@v2
 
-    - name: Install micromamba
-      shell: bash -l {0}
-      run: |
-        wget -qO- https://micromamba.snakepit.net/api/micromamba/osx-64/latest | tar -xvj bin/micromamba
-        mv bin/micromamba ./micromamba
-        ./micromamba shell init -s bash -p $HOME/micromamba
-        mkdir -p $HOME/micromamba/pkgs/
-
-    - name: Mamba create env
-      shell: bash -l {0}
-      run: |
-        . $MAMBA_ROOT_PREFIX/etc/profile.d/mamba.sh
-        ./micromamba create --yes --name TEST python=3 pip --file requirements.txt --file requirements-dev.txt --channel conda-forge --strict-channel-priority
+    - name: Setup Conda
+      uses: s-weigand/setup-conda@v1
+      with:
+        activate-conda: false
+        conda-channels: conda-forge
 
-    - name: Install folium
+    - name: Create env
       shell: bash -l {0}
       run: |
-        $MAMBA_ROOT_PREFIX/envs/TEST/bin/pip install -e . --no-deps --force-reinstall
+        conda create --yes --name TEST python=3 pip --file requirements.txt --file requirements-dev.txt --channel conda-forge --strict-channel-priority
+        source activate TEST
+        pip install -e . --no-deps --force-reinstall
 
     - name: Notebook tests
       shell: bash -l {0}
       run: |
-        $MAMBA_ROOT_PREFIX/envs/TEST/bin/pytest --nbval-lax examples
+        source activate TEST
+        pytest --nbval-lax examples
diff --git a/.github/workflows/test_style_notebooks.yml b/.github/workflows/test_style_notebooks.yml
@@ -8,38 +8,28 @@ on:
     branches:
     - master
 
-env:
-  MAMBA_ROOT_PREFIX: $HOME/micromamba
-  MAMBA_EXE: $(pwd)/micromamba
-
 jobs:
   run:
-    #  change to Linux when we fix micromamba
-    runs-on: macos-latest
+    runs-on: ubuntu-latest
 
     steps:
     - uses: actions/checkout@v2
 
-    - name: Install micromamba
-      shell: bash -l {0}
-      run: |
-        wget -qO- https://micromamba.snakepit.net/api/micromamba/osx-64/latest | tar -xvj bin/micromamba
-        mv bin/micromamba ./micromamba
-        ./micromamba shell init -s bash -p $HOME/micromamba
-        mkdir -p $HOME/micromamba/pkgs/
-
-    - name: Mamba create env
-      shell: bash -l {0}
-      run: |
-        . $MAMBA_ROOT_PREFIX/etc/profile.d/mamba.sh
-        ./micromamba create --yes --name TEST python=3 pip --file requirements.txt --file requirements-dev.txt --channel conda-forge --strict-channel-priority
+    - name: Setup Conda
+      uses: s-weigand/setup-conda@v1
+      with:
+        activate-conda: false
+        conda-channels: conda-forge
 
-    - name: Install folium
+    - name: Create env
       shell: bash -l {0}
       run: |
-        $MAMBA_ROOT_PREFIX/envs/TEST/bin/pip install -e . --no-deps --force-reinstall
+        conda create --yes --name TEST python=3 pip --file requirements.txt --file requirements-dev.txt --channel conda-forge --strict-channel-priority
+        source activate TEST
+        pip install -e . --no-deps --force-reinstall
 
     - name: Notebook coding standards tests
       shell: bash -l {0}
       run: |
-        $MAMBA_ROOT_PREFIX/envs/TEST/bin/flake8-nb examples --ignore=W391,E226,E402,W504,I100,I201,I202,E703 --max-line-length=120 --show-source --count
+        source activate TEST
+        flake8-nb examples --ignore=W391,E226,E402,W504,I100,I201,I202,E703 --max-line-length=120 --show-source --count
