Merge branch 'main' into buildignore-dotlintr

Author: IndrajeetPatil

.dev/revdep_compare_releases.R

@@ -7,6 +7,7 @@ library(glue)
 if (!file.exists("revdep-repos")) {
   stop("Please run .dev/revdep_get_repos.R first before running this")
 }
+withr::local_options(width = 180)
 repo_data <- rbind(
   data.table::fread("revdep-repos"),
   # land after the initial lines of comments on the header line
@@ -24,7 +25,7 @@ if (length(failed_install) > 0L) {
 
 dev_dir <- getwd()
 dev_branch <- system2("git", c("rev-parse", "--abbrev-ref", "HEAD"), stdout = TRUE)
-old_release <- "v2.0.1"
+old_release <- "v3.0.2"
 main <- "main"
 
 all_repos <- repo_data$repo
@@ -208,7 +209,7 @@ summarize_lint_delta <- function(new, old) {
   ][, .(line = sprintf("%s [%s]", line, linter), location = paste0(package, ":", filename))
   ][, print(.SD)]
 
-  NULL
+  invisible()
 }
 
 # ---- Main linting execution ----
@@ -229,12 +230,17 @@ main_only <- setdiff(basename(main_results), basename(old_results))
 old_only <- setdiff(basename(old_results), basename(main_results))
 shared <- intersect(basename(main_results), basename(old_results))
 
-message("The following packages warned on ", main, " only: ")
-message("  ", toString(match_and_strip(main_only, "\\.warnings$")), "\n")
-message("The following packages warned on ", old_release, " only: ")
-message("  ", toString(match_and_strip(old_only, "\\.warnings$")), "\n")
-message("The following packages warned on both branches: ")
-message("  ", toString(match_and_strip(shared, "\\.warnings$")), "\n")
+summarize_warned <- function(warned, label) {
+  message("The following packages warned on ", label, ":")
+  if (length(warned) > 0) {
+    message("  ", toString(match_and_strip(warned, "\\.warnings$")), "\n")
+  } else {
+    message("  None! 🎉")
+  }
+}
+summarize_warned(main_only, "main only")
+summarize_warned(old_only, paste(old_release, "only"))
+summarize_warned(shared, "both branches")
 
 main_only <- grep("warnings$", main_only, invert = TRUE, value = TRUE)
 old_only <- grep("warnings$", old_only, invert = TRUE, value = TRUE)

.github/dependabot.yaml

@@ -0,0 +1,15 @@
+# This Dependabot configuration is designed to keep GitHub Actions dependencies up-to-date
+# by running weekly checks and creating pull requests to update them as needed.
+#
+# This ensures that the GitHub Actions workflows remain compatible with the latest versions
+# of their dependencies, potentially improving the stability and security of automation processes.
+#
+# For more, see:
+# https://docs.github.com/en/code-security/dependabot/dependabot-alerts/about-dependabot-alerts
+version: 2
+
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"

.github/workflows/R-CMD-check-hard.yaml

@@ -36,7 +36,7 @@ jobs:
       R_KEEP_PKG_SOURCE: yes
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-pandoc@v2
 

.github/workflows/R-CMD-check.yaml

@@ -12,6 +12,10 @@ on:
 
 name: R-CMD-check
 
+concurrency:
+  group: ${{ github.event.pull_request.number || github.run_id }}
+  cancel-in-progress: true
+
 jobs:
   R-CMD-check:
     runs-on: ${{ matrix.config.os }}
@@ -39,7 +43,7 @@ jobs:
           - {os: ubuntu-latest,  r: 'oldrel-2'}
           - {os: ubuntu-latest,  r: 'oldrel-3'}
           - {os: ubuntu-latest,  r: 'oldrel-4'}
-          - {os: ubuntu-latest,  r: '3.4'}
+          - {os: ubuntu-latest,  r: '3.5'}
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
@@ -58,7 +62,7 @@ jobs:
           sudo locale-gen zh_CN
           echo "LC_ALL=zh_CN" >> $GITHUB_ENV
 
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-pandoc@v2
 
@@ -73,9 +77,6 @@ jobs:
         with:
           extra-packages: |
             any::rcmdcheck
-            bookdown=?ignore-before-r=3.5.0
-            patrick=?ignore-before-r=3.5.0
-            purrr=?ignore-before-r=3.5.0
           needs: check
 
       - uses: r-lib/actions/check-r-package@v2

.github/workflows/check-all-examples.yaml

@@ -22,7 +22,7 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
         with:

.github/workflows/check-link-rot.yaml

@@ -13,7 +13,7 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
       R_KEEP_PKG_SOURCE: yes
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-pandoc@v2
 

.github/workflows/lint-changed-files.yaml

@@ -12,7 +12,7 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
         with:
@@ -28,3 +28,5 @@ jobs:
       - name: Lint
         run: lintr::lint_package()
         shell: Rscript {0}
+        env:
+          LINTR_ERROR_ON_LINT: true

.github/workflows/lint.yaml

@@ -20,7 +20,7 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-pandoc@v2
 
@@ -39,7 +39,7 @@ jobs:
 
       - name: Deploy to GitHub pages 🚀
         if: github.event_name != 'pull_request'
-        uses: JamesIves/[email protected].1
+        uses: JamesIves/[email protected].3
         with:
           clean: false
           branch: gh-pages

.github/workflows/pkgdown.yaml

@@ -15,7 +15,7 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
         with:

.github/workflows/test-coverage.yaml

@@ -14,7 +14,7 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
         with:

.github/workflows/test-package-vigilant.yaml

@@ -1,16 +1,50 @@
 linters: linters_with_defaults(
-   line_length_linter(120),
-   implicit_integer_linter(),
-   backport_linter("oldrel-4", except = c("R_user_dir", "str2lang", "str2expression", "deparse1"))
- )
+    any_duplicated_linter(),
+    any_is_na_linter(),
+    backport_linter("oldrel-4", except = c("R_user_dir", "str2lang", "str2expression", "deparse1", "...names")),
+    consecutive_assertion_linter(),
+    expect_comparison_linter(),
+    expect_identical_linter(),
+    expect_length_linter(),
+    expect_named_linter(),
+    expect_not_linter(),
+    expect_null_linter(),
+    expect_s3_class_linter(),
+    expect_s4_class_linter(),
+    expect_true_false_linter(),
+    expect_type_linter(),
+    fixed_regex_linter(),
+    for_loop_index_linter(),
+    if_not_else_linter(),
+    implicit_assignment_linter(),
+    implicit_integer_linter(),
+    keyword_quote_linter(),
+    lengths_linter(),
+    line_length_linter(120),
+    missing_argument_linter(),
+    nested_ifelse_linter(),
+    numeric_leading_zero_linter(),
+    outer_negation_linter(),
+    paste_linter(),
+    redundant_equals_linter(),
+    redundant_ifelse_linter(),
+    sort_linter(),
+    sprintf_linter(),
+    strings_as_factors_linter(),
+    undesirable_function_linter(c(Sys.setenv = NA_character_)),
+    unnecessary_nested_if_linter(),
+    unnecessary_lambda_linter(),
+    unnecessary_concatenation_linter(allow_single_expression = FALSE),
+    yoda_test_linter()
+  )
 exclusions: list(
-  "inst/doc/creating_linters.R" = 1,
-  "inst/example/bad.R",
-  "tests/testthat/default_linter_testcode.R",
-  "tests/testthat/dummy_packages",
-  "tests/testthat/dummy_projects",
-  "tests/testthat/exclusions-test",
-  "tests/testthat/knitr_extended_formats",
-  "tests/testthat/knitr_formats",
-  "tests/testthat/knitr_malformed"
- )
+    "inst/doc/creating_linters.R" = 1,
+    "inst/example/bad.R",
+    "tests/testthat/default_linter_testcode.R",
+    "tests/testthat/dummy_packages",
+    "tests/testthat/dummy_projects",
+    "tests/testthat/exclusions-test",
+    "tests/testthat/knitr_extended_formats",
+    "tests/testthat/knitr_formats",
+    "tests/testthat/knitr_malformed"
+  )