diff --git a/.github/workflows/pre-commit.yaml b/.github/workflows/pre-commit.yaml
index d6247f338..2318ab9e1 100644
--- a/.github/workflows/pre-commit.yaml
+++ b/.github/workflows/pre-commit.yaml
@@ -27,7 +27,7 @@ jobs:
           fetch-depth: 0
 
       - name: Set up Python
-        uses: actions/setup-python@v5.5.0
+        uses: actions/setup-python@v5.6.0
         with:
           python-version: "3.13"
 
diff --git a/.lintr b/.lintr
index 726a8b596..35fa23b05 100644
--- a/.lintr
+++ b/.lintr
@@ -11,10 +11,11 @@ linters: all_linters(
     object_length_linter(70L),
     object_overwrite_linter = NULL,
     object_usage_linter = NULL,
-    todo_comment_linter = NULL,
     nonportable_path_linter = NULL,
+    pipe_consistency_linter = NULL,
     string_boundary_linter = NULL,
     strings_as_factors_linter = NULL, # since we use R >= 4.0
+    todo_comment_linter = NULL,
     undesirable_function_linter = NULL,
     undesirable_operator_linter = NULL
   )
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index d9e284869..15e933f66 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -6,7 +6,7 @@ default_language_version:
 
 repos:
   - repo: https://github.com/lorenzwalthert/precommit
-    rev: v0.4.3.9008
+    rev: v0.4.3.9009
     hooks:
       - id: style-files
         args: