Build(ci): Bump actions/checkout from 5 to 6

Bumps [actions/checkout](https://github.com/actions/checkout) from 5 to 6.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v5...v6)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-version: '6'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

Author: dependabot[bot]

.github/workflows/asv.yml

@@ -13,7 +13,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
       with:
         fetch-depth: 0
 

.github/workflows/build_wheel.yml

@@ -36,7 +36,7 @@ jobs:
       fail-fast: false
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
 
@@ -61,7 +61,7 @@ jobs:
     runs-on: ubuntu-latest
     if: false  # disable for now, need to fix emsdk with Rust: https://github.com/emscripten-core/emscripten/pull/24359
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
 
       - name: Build wheels
         uses: pypa/cibuildwheel@v3.3.1

.github/workflows/build_wheel_all_archs.yml

@@ -20,7 +20,7 @@ jobs:
         #target: [aarch64, ppc64le]
         #target: [aarch64, s390x, ppc64le]
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
 
@@ -46,7 +46,7 @@ jobs:
   windows:
     runs-on: windows-latest
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
 
       - uses: actions/setup-python@v6
         with:

.github/workflows/codspeed.yml

@@ -15,7 +15,7 @@ jobs:
   benchmarks-rust:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
 
       - name: Setup rust toolchain, cache and cargo-codspeed binary
         uses: moonrepo/setup-rust@v1

.github/workflows/dev_envs.yml

@@ -13,7 +13,7 @@ jobs:
       matrix:
         os: [ubuntu-latest, macos-14]
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
       with:
         fetch-depth: 0
 
@@ -30,7 +30,7 @@ jobs:
       matrix:
         os: [ubuntu-latest, macos-14]
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
       with:
         fetch-depth: 0
 
@@ -51,7 +51,7 @@ jobs:
       matrix:
         os: [ubuntu-latest, macos-14]
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
       with:
         fetch-depth: 0
 

.github/workflows/draft-pdf.yml

@@ -6,7 +6,7 @@ jobs:
     name: Paper Draft
     steps:
       - name: Checkout
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Build draft PDF
         uses: openjournals/openjournals-draft-action@master
         with:

.github/workflows/hypothesis.yml

@@ -11,7 +11,7 @@ jobs:
   test:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
 

.github/workflows/metadata.yml

@@ -12,7 +12,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout sources
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: Trigger new archival in software heritage on new tags
         if: startsWith(github.ref, 'refs/tags/')

.github/workflows/python.yml

@@ -18,7 +18,7 @@ jobs:
       fail-fast: false
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
 

.github/workflows/rust.yml

@@ -18,7 +18,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout sources
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: set up pixi
         uses: prefix-dev/setup-pixi@v0.9.3
@@ -58,7 +58,7 @@ jobs:
             rust: stable
             continue: false
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
 
       - uses: dtolnay/rust-toolchain@master
         with:
@@ -75,7 +75,7 @@ jobs:
   test_all_features:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
 
       - name: set up pixi
         uses: prefix-dev/setup-pixi@v0.9.3
@@ -93,7 +93,7 @@ jobs:
   coverage:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
 
       - name: set up pixi
         uses: prefix-dev/setup-pixi@v0.9.3
@@ -128,7 +128,7 @@ jobs:
             rust: stable
     steps:
       - name: Checkout sources
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: Install Rust toolchain
         uses: dtolnay/rust-toolchain@master
@@ -150,7 +150,7 @@ jobs:
     name: Check if wasm-pack builds a valid package for the sourmash crate
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
 
       - name: set up pixi
         uses: prefix-dev/setup-pixi@v0.9.3
@@ -186,7 +186,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout sources
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: set up pixi
         uses: prefix-dev/setup-pixi@v0.9.3
@@ -216,7 +216,7 @@ jobs:
   minimum_rust_version:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
 
       - name: set up pixi
         uses: prefix-dev/setup-pixi@v0.9.3
@@ -237,7 +237,7 @@ jobs:
     name: "Check if cbindgen runs cleanly for generating the C headers"
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
 
       - name: set up pixi
         uses: prefix-dev/setup-pixi@v0.9.3