Merge branch 'main' into kerchunk

Author: jsignell

.github/workflows/release.yml

@@ -12,10 +12,10 @@ jobs:
 
     steps:
       - name: checkout repo
-        uses: actions/checkout@v3.3.0
+        uses: actions/checkout@v4
 
       - name: Set up Python
-        uses: actions/setup-python@v3
+        uses: actions/setup-python@v5
         with:
           python-version: "3.x"
 

.github/workflows/tests.yml

@@ -24,26 +24,22 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest]
-        python-version: ["3.8", "3.9", "3.10", "3.11"]
-        environment-file: ["environment.yaml"]
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
     defaults:
       run:
         shell: bash -l {0}
 
     steps:
       - name: checkout repo
-        uses: actions/checkout@v3.3.0
+        uses: actions/checkout@v4
 
-      - name: setup micromamba
-        uses: mamba-org/setup-micromamba@main
+      - uses: astral-sh/setup-uv@v5
         with:
-          environment-file: ${{ matrix.environment-file }}
-          micromamba-version: "latest"
-          create-args: python=${{ matrix.python-version }}
+          python-version: ${{ matrix.python-version }}
 
-      - name: install xpystac
-        run: pip install .
+      - name: sync
+        run: uv sync --all-extras
 
       - name: run tests
         id: status
-        run: pytest -v --cov xpystac --cov-report term-missing --vcr-record=none .
+        run: uv run pytest -v --cov xpystac --cov-report term-missing .

.gitignore

@@ -6,4 +6,5 @@ dist
 .mypy_cache
 .pytest_cache
 .ruff_cache
-*.egg-info/
+*.egg-info/
+.venv

.pre-commit-config.yaml

@@ -2,28 +2,20 @@
 # Please run `pre-commit run --all-files` when adding or changing entries.
 
 repos:
--   repo: https://github.com/MarcoGorelli/absolufy-imports
-    rev: v0.3.1
-    hooks:
-      - id: absolufy-imports
-        name: absolufy-imports
 -   repo: https://github.com/asottile/pyupgrade
-    rev: v3.2.2
+    rev: v3.19.1
     hooks:
       - id: pyupgrade
         args:
-          - --py38-plus
+          - --py310-plus
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: 'v0.0.272'
+    rev: 'v0.9.10'
     hooks:
     - id: ruff
-      args: [--fix, --exit-non-zero-on-fix]
--   repo: https://github.com/psf/black
-    rev: 23.1.0
-    hooks:
-      - id: black
+      args: [--fix, --unsafe-fixes, --exit-non-zero-on-fix]
+    - id: ruff-format
 -   repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v0.991
+    rev: v1.15.0
     hooks:
       - id: mypy
         files: ".*\\.py$"

README.md

@@ -47,7 +47,7 @@ Read from a reference file:
 collection = catalog.get_collection("nasa-nex-gddp-cmip6")
 asset = collection.assets["ACCESS-CM2.historical"]
 
-xr.open_dataset(asset)
+xr.open_dataset(asset, patch_url=planetary_computer.sign)
 ```
 ref: https://planetarycomputer.microsoft.com/dataset/nasa-nex-gddp-cmip6#Example-Notebook
 
@@ -58,7 +58,7 @@ Read from a zarr file:
 collection = catalog.get_collection("daymet-daily-hi")
 asset = collection.assets["zarr-abfs"]
 
-xr.open_dataset(asset)
+xr.open_dataset(asset, patch_url=planetary_computer.sign)
 ```
 ref: https://planetarycomputer.microsoft.com/docs/quickstarts/reading-zarr-data/
 

pyproject.toml

@@ -14,7 +14,7 @@ dependencies = [
     "xarray",
     "pystac>=1.0.1",
 ]
-requires-python = ">=3.8"
+requires-python = ">=3.10"
 description = "Extend xarray.open_dataset to accept pystac objects"
 license = {text = "MIT"}
 readme = "README.md"
@@ -24,10 +24,24 @@ dynamic = ["version"]
 Home = "https://github.com/stac-utils/xpystac"
 Repository = "https://github.com/stac-utils/xpystac"
 
-[project.optional-dependencies]
+[dependency-groups]
 dev = [
-  "pytest",
-  "pre-commit",
+    "adlfs>=2024.12.0",
+    "aiohttp>=3.11.13",
+    "fsspec>=2025.3.0",
+    "kerchunk>=0.2.7",
+    "odc-stac>=0.3.11",
+    "planetary-computer>=1.0.0",
+    "pre-commit>=4.0.1",
+    "pystac<1.12",
+    "pystac-client>=0.8.6",
+    "pytest>=8.3.3",
+    "pytest-cov>=6.0.0",
+    "requests>=2.32.3",
+    "rioxarray>=0.18.2",
+    "stackstac>=0.5.1",
+    "urllib3>=2.3.0",
+    "zarr<3",
 ]
 
 [project.entry-points."xarray.backends"]
@@ -40,4 +54,8 @@ include = [
 
 [tool.ruff]
 line-length = 88
-select = ["E", "F", "W", "I"]
+lint.select = ["E", "F", "W", "I", "TID252" ]
+target-version = "py310"
+
+[tool.ruff.lint.flake8-tidy-imports]
+ban-relative-imports = "all"