|
25 | 25 | or is an isolated non-sample node.
|
26 | 26 | (:user:`szhan`, :pr:`2618`, :issue:`2616`)
|
27 | 27 |
|
| 28 | +- The ``msprime.RateMap`` class has been ported into tskit: functionality should |
| 29 | + be identical to the version in msprime, apart from minor changes in the formatting |
| 30 | + of tabular text output (:user:`hyanwong`, :user:`jeromekelleher`, :pr:`2678`) |
| 31 | + |
28 | 32 | **Breaking Changes**
|
29 | 33 |
|
30 | 34 | - the ``filter_populations``, ``filter_individuals``, and ``filter_sites``
|
|
62 | 66 |
|
63 | 67 | - Single statistics computed with ``TreeSequence.general_stat`` are now
|
64 | 68 | returned as numpy scalars if windows=None, AND; samples is a single
|
65 |
| - list or None (for a 1-way stat), OR indexes is None or a single list of |
| 69 | + list or None (for a 1-way stat), OR indexes is None or a single list of |
66 | 70 | length k (instead of a list of length-k lists).
|
67 | 71 | (:user:`gtsambos`, :pr:`2417`, :issue:`2308`)
|
68 | 72 |
|
|
77 | 81 | **Performance improvements**
|
78 | 82 |
|
79 | 83 | - TreeSequence.link_ancestors no longer continues to process edges once all
|
80 |
| - of the sample and ancestral nodes have been accounted for, improving memory |
| 84 | + of the sample and ancestral nodes have been accounted for, improving memory |
81 | 85 | overhead and overall performance
|
82 | 86 | (:user:`gtsambos`, :pr:`2456`, :issue:`2442`)
|
83 |
| - |
| 87 | + |
84 | 88 | --------------------
|
85 | 89 | [0.5.2] - 2022-07-29
|
86 | 90 | --------------------
|
|
0 commit comments