Autoupdate tool blog post

Author: UseGalaxy.EU Jenkins Bot

_posts/2026-03-29-tool-update.md

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+---
+site: freiburg
+tags: [tools]
+title: UseGalaxy.eu Tool Updates for 2026-03-29
+supporters:
+- denbi
+- elixir
+---
+
+On 2026-03-29, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #573](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#573/)
+
+
+## Join, Subtract and Group
+
+- datamash_ops was updated to [aaafc0ac4dd2](https://toolshed.g2.bx.psu.edu/view/iuc/datamash_ops/aaafc0ac4dd2)
+- datamash_reverse was updated to [b5cc41ad28b3](https://toolshed.g2.bx.psu.edu/view/iuc/datamash_reverse/b5cc41ad28b3)
+- datamash_transpose was updated to [a884245d3b3a](https://toolshed.g2.bx.psu.edu/view/iuc/datamash_transpose/a884245d3b3a)
+
+## Text Manipulation
+
+- jq was updated to [8c505f8f2977](https://toolshed.g2.bx.psu.edu/view/iuc/jq/8c505f8f2977)
+
+## Machine Learning
+
+- keras_batch_models was updated to [1252578525d1](https://toolshed.g2.bx.psu.edu/view/bgruening/keras_batch_models/1252578525d1)
+- keras_model_builder was updated to [e4af79bffd57](https://toolshed.g2.bx.psu.edu/view/bgruening/keras_model_builder/e4af79bffd57)
+- keras_model_config was updated to [00b2ee48b412](https://toolshed.g2.bx.psu.edu/view/bgruening/keras_model_config/00b2ee48b412)
+- keras_train_and_eval was updated to [6ecb3d77d46e](https://toolshed.g2.bx.psu.edu/view/bgruening/keras_train_and_eval/6ecb3d77d46e)
+- ml_visualization_ex was updated to [21730620a849](https://toolshed.g2.bx.psu.edu/view/bgruening/ml_visualization_ex/21730620a849)
+- model_prediction was updated to [eae46976fbb8](https://toolshed.g2.bx.psu.edu/view/bgruening/model_prediction/eae46976fbb8)
+- sklearn_build_pipeline was updated to [bc0117538945](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_build_pipeline/bc0117538945)
+- sklearn_clf_metrics was updated to [a0061a087409](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_clf_metrics/a0061a087409)
+- sklearn_data_preprocess was updated to [f2234165a453](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_data_preprocess/f2234165a453)
+- sklearn_discriminant_classifier was updated to [4ee087eeda62](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_discriminant_classifier/4ee087eeda62)
+- sklearn_ensemble was updated to [cab63604ca1d](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_ensemble/cab63604ca1d)
+- sklearn_estimator_attributes was updated to [3881482e568e](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_estimator_attributes/3881482e568e)
+- sklearn_feature_selection was updated to [9e0e31bd8392](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_feature_selection/9e0e31bd8392)
+- sklearn_fitted_model_eval was updated to [9a3cb21a3661](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_fitted_model_eval/9a3cb21a3661)
+- sklearn_generalized_linear was updated to [d3fe6fcc6bf4](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_generalized_linear/d3fe6fcc6bf4)
+- sklearn_label_encoder was updated to [1e006ebbcaf5](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_label_encoder/1e006ebbcaf5)
+- sklearn_lightgbm was updated to [f04f39a6825d](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_lightgbm/f04f39a6825d)
+- sklearn_model_fit was updated to [9084156b2bb5](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_model_fit/9084156b2bb5)
+- sklearn_model_validation was updated to [845dfafac355](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_model_validation/845dfafac355)
+- sklearn_nn_classifier was updated to [187226dceb22](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_nn_classifier/187226dceb22)
+- sklearn_numeric_clustering was updated to [86d4c2b66e16](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_numeric_clustering/86d4c2b66e16)
+- sklearn_pairwise_metrics was updated to [df87a7702f97](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_pairwise_metrics/df87a7702f97)
+- sklearn_regression_metrics was updated to [4e6ada84d334](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_regression_metrics/4e6ada84d334)
+- sklearn_sample_generator was updated to [04b160a26690](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_sample_generator/04b160a26690)
+- sklearn_searchcv was updated to [5023535e9f8b](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_searchcv/5023535e9f8b)
+- sklearn_svm_classifier was updated to [61461e52c923](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_svm_classifier/61461e52c923)
+- sklearn_to_categorical was updated to [89f11e2b0673](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_to_categorical/89f11e2b0673)
+- sklearn_train_test_eval was updated to [b3a4682eabb6](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_train_test_eval/b3a4682eabb6)
+- sklearn_train_test_split was updated to [fc0f9ba14aaa](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_train_test_split/fc0f9ba14aaa)
+
+## Statistics
+
+- scipy_sparse was updated to [233aab4c1be8](https://toolshed.g2.bx.psu.edu/view/bgruening/scipy_sparse/233aab4c1be8)
+
+## Population Genomics
+
+- population_genomics_split_vcf_by_pop was updated to [6dfe228eb03c](https://toolshed.g2.bx.psu.edu/view/ecology/population_genomics_split_vcf_by_pop/6dfe228eb03c)
+- population_genomics_vcf_filtering was updated to [ba40ff83be36](https://toolshed.g2.bx.psu.edu/view/ecology/population_genomics_vcf_filtering/ba40ff83be36)
+- population_genomics_vcf_keep_remove_individuals was updated to [6bafe9f61117](https://toolshed.g2.bx.psu.edu/view/ecology/population_genomics_vcf_keep_remove_individuals/6bafe9f61117)
+- population_genomics_vcf_subset was updated to [b03ede8e228e](https://toolshed.g2.bx.psu.edu/view/ecology/population_genomics_vcf_subset/b03ede8e228e)
+
+## Metabolomics
+
+- waveica was updated to [bf28a0fc0db6](https://toolshed.g2.bx.psu.edu/view/recetox/waveica/bf28a0fc0db6)
+
+## Metagenomic Analysis
+
+- genomad_end_to_end was updated to [e8c8dfc6a809](https://toolshed.g2.bx.psu.edu/view/ufz/genomad_end_to_end/e8c8dfc6a809)
+
+## QIIME 2
+
+- qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2)
+- qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623)
+
+## Imaging
+
+- json2yolosegment was updated to [72985f2dd91c](https://toolshed.g2.bx.psu.edu/view/bgruening/json2yolosegment/72985f2dd91c)
+- yolo_predict was updated to [24dfd7800749](https://toolshed.g2.bx.psu.edu/view/bgruening/yolo_predict/24dfd7800749)
+- yolo_training was updated to [ca14397c975d](https://toolshed.g2.bx.psu.edu/view/bgruening/yolo_training/ca14397c975d)
+
+## Annotation
+
+- chewbbaca_allelecall was updated to [e4ad2cf041fb](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_allelecall/e4ad2cf041fb)
+- chewbbaca_allelecallevaluator was updated to [a1420ba0b457](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_allelecallevaluator/a1420ba0b457)
+- chewbbaca_createschema was updated to [6a6c9e46cb8b](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_createschema/6a6c9e46cb8b)
+- chewbbaca_downloadschema was updated to [9a68fa4842bb](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_downloadschema/9a68fa4842bb)
+- chewbbaca_extractcgmlst was updated to [a3d1181467e4](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_extractcgmlst/a3d1181467e4)
+- chewbbaca_joinprofiles was updated to [46269c0ef8e9](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_joinprofiles/46269c0ef8e9)
+- chewbbaca_nsstats was updated to [eb91c1b90a84](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_nsstats/eb91c1b90a84)
+- chewbbaca_prepexternalschema was updated to [604c4097461d](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_prepexternalschema/604c4097461d)
+- hicap was updated to [9b6fec5c9e43](https://toolshed.g2.bx.psu.edu/view/iuc/hicap/9b6fec5c9e43)
+- mist_call was updated to [faff357af604](https://toolshed.g2.bx.psu.edu/view/iuc/mist_call/faff357af604)
+- mist_dists was updated to [7fe9376e5a36](https://toolshed.g2.bx.psu.edu/view/iuc/mist_dists/7fe9376e5a36)
+- mmseqs2_easy_cluster was updated to [59455fdec91a](https://toolshed.g2.bx.psu.edu/view/iuc/mmseqs2_easy_cluster/59455fdec91a)
+- mmseqs2_easy_linsearch was updated to [8dc2c623c210](https://toolshed.g2.bx.psu.edu/view/iuc/mmseqs2_easy_linsearch/8dc2c623c210)
+- mmseqs2_easy_rbh was updated to [07f18a82aeea](https://toolshed.g2.bx.psu.edu/view/iuc/mmseqs2_easy_rbh/07f18a82aeea)
+- mmseqs2_easy_search was updated to [099360265689](https://toolshed.g2.bx.psu.edu/view/iuc/mmseqs2_easy_search/099360265689)
+- mmseqs2_easy_taxonomy was updated to [7cbb57e5b351](https://toolshed.g2.bx.psu.edu/view/iuc/mmseqs2_easy_taxonomy/7cbb57e5b351)
+- mmseqs2_taxonomy_assignment was updated to [bd5630d401cd](https://toolshed.g2.bx.psu.edu/view/iuc/mmseqs2_taxonomy_assignment/bd5630d401cd)
+
+## Collection Operations
+
+- collection_element_identifiers was updated to [3e27acfa4830](https://toolshed.g2.bx.psu.edu/view/iuc/collection_element_identifiers/3e27acfa4830)
+
+## Evolution
+
+- revoluzer_crex was updated to [15317b79c449](https://toolshed.g2.bx.psu.edu/view/iuc/revoluzer_crex/15317b79c449)
+- revoluzer_distmat was updated to [1fb83776b10b](https://toolshed.g2.bx.psu.edu/view/iuc/revoluzer_distmat/1fb83776b10b)
+
+## FASTA/FASTQ
+
+- rasusa was updated to [cf65e5c28134](https://toolshed.g2.bx.psu.edu/view/iuc/rasusa/cf65e5c28134)
+
+## Mapping
+
+- minimap2 was updated to [3faf9a2bf58d](https://toolshed.g2.bx.psu.edu/view/iuc/minimap2/3faf9a2bf58d)
+
+## Multiple Alignments
+
+- mmseqs2_easy_linclust_clustering was updated to [1bc9b91a91fd](https://toolshed.g2.bx.psu.edu/view/iuc/mmseqs2_easy_linclust_clustering/1bc9b91a91fd)
+
+## RNA Analysis
+
+- seurat_clustering was updated to [0db84eba4b55](https://toolshed.g2.bx.psu.edu/view/iuc/seurat_clustering/0db84eba4b55)
+- seurat_create was updated to [ac5f8c583cba](https://toolshed.g2.bx.psu.edu/view/iuc/seurat_create/ac5f8c583cba)
+- seurat_data was updated to [dde965aee073](https://toolshed.g2.bx.psu.edu/view/iuc/seurat_data/dde965aee073)
+- seurat_integrate was updated to [7704fb998596](https://toolshed.g2.bx.psu.edu/view/iuc/seurat_integrate/7704fb998596)
+- seurat_plot was updated to [c520f64ffd57](https://toolshed.g2.bx.psu.edu/view/iuc/seurat_plot/c520f64ffd57)
+- seurat_preprocessing was updated to [156e5b07369a](https://toolshed.g2.bx.psu.edu/view/iuc/seurat_preprocessing/156e5b07369a)
+- seurat_reduce_dimension was updated to [c15978515ff0](https://toolshed.g2.bx.psu.edu/view/iuc/seurat_reduce_dimension/c15978515ff0)
+
+## SAM/BAM
+
+- coverage_report was updated to [8d45cac1ee32](https://toolshed.g2.bx.psu.edu/view/iuc/coverage_report/8d45cac1ee32)
+- samtools_view was updated to [5cf9fcc93508](https://toolshed.g2.bx.psu.edu/view/iuc/samtools_view/5cf9fcc93508)
+
+## Single-cell
+
+- scanpy_cluster_reduce_dimension was updated to [795751257d82](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_cluster_reduce_dimension/795751257d82)
+- scanpy_filter was updated to [2e6029e47eb5](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_filter/2e6029e47eb5)
+- scanpy_inspect was updated to [a8d291df615d](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_inspect/a8d291df615d)
+- scanpy_normalize was updated to [2b6498d4c8c6](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_normalize/2b6498d4c8c6)
+- scanpy_plot was updated to [7f478b3258ec](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_plot/7f478b3258ec)
+- scanpy_remove_confounders was updated to [80fe16f87825](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_remove_confounders/80fe16f87825)
+
+## Variant Calling
+
+- bcftools_plugin_dosage was updated to [0c50683a9c94](https://toolshed.g2.bx.psu.edu/view/iuc/bcftools_plugin_dosage/0c50683a9c94)
+- bcftools_plugin_tag2tag was updated to [9268b0ad92af](https://toolshed.g2.bx.psu.edu/view/iuc/bcftools_plugin_tag2tag/9268b0ad92af)
+- deepvariant was updated to [0a151b5f95e4](https://toolshed.g2.bx.psu.edu/view/iuc/deepvariant/0a151b5f95e4)
+
+## None
+
+- data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78)
+
+## Assembly
+
+- mira_assembler was updated to [6bf6e2c537c0](https://toolshed.g2.bx.psu.edu/view/peterjc/mira_assembler/6bf6e2c537c0)
+