Add v2, v3 specific dtypes

Author: dcherian

src/zarr/core/buffer/core.py

@@ -469,7 +469,9 @@ def all_equal(self, other: Any, equal_nan: bool = True) -> bool:
             return False
         # use array_equal to obtain equal_nan=True functionality
         data, other = np.broadcast_arrays(self._data, other)
-        result = np.array_equal(self._data, other, equal_nan=equal_nan)
+        result = np.array_equal(
+            self._data, other, equal_nan=equal_nan if self._data.dtype.kind not in "US" else False
+        )
         return result
 
     def fill(self, value: Any) -> None:

src/zarr/testing/strategies.py

@@ -1,4 +1,4 @@
-from typing import Any
+from typing import Any, Literal
 
 import hypothesis.extra.numpy as npst
 import hypothesis.strategies as st
@@ -19,19 +19,34 @@
 )
 
 
-def dtypes() -> st.SearchStrategy[np.dtype]:
+def v3_dtypes() -> st.SearchStrategy[np.dtype]:
     return (
         npst.boolean_dtypes()
         | npst.integer_dtypes(endianness="=")
         | npst.unsigned_integer_dtypes(endianness="=")
         | npst.floating_dtypes(endianness="=")
         | npst.complex_number_dtypes(endianness="=")
+        # | npst.byte_string_dtypes(endianness="=")
         # | npst.unicode_string_dtypes()
         # | npst.datetime64_dtypes()
         # | npst.timedelta64_dtypes()
     )
 
 
+def v2_dtypes() -> st.SearchStrategy[np.dtype]:
+    return (
+        npst.boolean_dtypes()
+        | npst.integer_dtypes(endianness="=")
+        | npst.unsigned_integer_dtypes(endianness="=")
+        | npst.floating_dtypes(endianness="=")
+        | npst.complex_number_dtypes(endianness="=")
+        | npst.byte_string_dtypes(endianness="=")
+        | npst.unicode_string_dtypes(endianness="=")
+        | npst.datetime64_dtypes()
+        # | npst.timedelta64_dtypes()
+    )
+
+
 # From https://zarr-specs.readthedocs.io/en/latest/v3/core/v3.0.html#node-names
 # 1. must not be the empty string ("")
 # 2. must not include the character "/"
@@ -46,18 +61,29 @@ def dtypes() -> st.SearchStrategy[np.dtype]:
 array_names = node_names
 attrs = st.none() | st.dictionaries(_attr_keys, _attr_values)
 paths = st.lists(node_names, min_size=1).map(lambda x: "/".join(x)) | st.just("/")
-np_arrays = npst.arrays(
-    dtype=dtypes(),
-    shape=npst.array_shapes(max_dims=4),
-)
 stores = st.builds(MemoryStore, st.just({}), mode=st.just("w"))
 compressors = st.sampled_from([None, "default"])
-zarr_formats = st.sampled_from([2, 3])
+zarr_formats: st.SearchStrategy[Literal[2, 3]] = st.sampled_from([2, 3])
+array_shapes = npst.array_shapes(max_dims=4)
+
+
+@st.composite  # type: ignore[misc]
+def numpy_arrays(
+    draw: st.DrawFn,
+    *,
+    shapes: st.SearchStrategy[tuple[int, ...]] = array_shapes,
+    zarr_formats: st.SearchStrategy[Literal[2, 3]] = zarr_formats,
+) -> Any:
+    """
+    Generate numpy arrays that can be saved in the provided Zarr format.
+    """
+    zarr_format = draw(zarr_formats)
+    return draw(npst.arrays(dtype=v3_dtypes() if zarr_format == 3 else v2_dtypes(), shape=shapes))
 
 
 @st.composite  # type: ignore[misc]
 def np_array_and_chunks(
-    draw: st.DrawFn, *, arrays: st.SearchStrategy[np.ndarray] = np_arrays
+    draw: st.DrawFn, *, arrays: st.SearchStrategy[np.ndarray] = numpy_arrays
 ) -> tuple[np.ndarray, tuple[int]]:  # type: ignore[type-arg]
     """A hypothesis strategy to generate small sized random arrays.
 
@@ -76,20 +102,23 @@ def np_array_and_chunks(
 def arrays(
     draw: st.DrawFn,
     *,
+    shapes: st.SearchStrategy[tuple[int, ...]] = array_shapes,
     compressors: st.SearchStrategy = compressors,
     stores: st.SearchStrategy[StoreLike] = stores,
-    arrays: st.SearchStrategy[np.ndarray] = np_arrays,
     paths: st.SearchStrategy[None | str] = paths,
     array_names: st.SearchStrategy = array_names,
+    arrays: st.SearchStrategy | None = None,
     attrs: st.SearchStrategy = attrs,
     zarr_formats: st.SearchStrategy = zarr_formats,
 ) -> Array:
     store = draw(stores)
-    nparray, chunks = draw(np_array_and_chunks(arrays=arrays))
     path = draw(paths)
     name = draw(array_names)
     attributes = draw(attrs)
     zarr_format = draw(zarr_formats)
+    if arrays is None:
+        arrays = numpy_arrays(shapes=shapes, zarr_formats=st.just(zarr_format))
+    nparray, chunks = draw(np_array_and_chunks(arrays=arrays))
     # test that None works too.
     fill_value = draw(st.one_of([st.none(), npst.from_dtype(nparray.dtype)]))
     # compressor = draw(compressors)

tests/v3/test_properties.py

@@ -7,13 +7,13 @@
 import hypothesis.extra.numpy as npst  # noqa
 import hypothesis.strategies as st  # noqa
 from hypothesis import given, settings  # noqa
-from zarr.testing.strategies import arrays, np_arrays, basic_indices  # noqa
+from zarr.testing.strategies import arrays, numpy_arrays, basic_indices, zarr_formats  # noqa
 
 
-@given(st.data())
-def test_roundtrip(data: st.DataObject) -> None:
-    nparray = data.draw(np_arrays)
-    zarray = data.draw(arrays(arrays=st.just(nparray)))
+@given(data=st.data(), zarr_format=zarr_formats)
+def test_roundtrip(data: st.DataObject, zarr_format: int) -> None:
+    nparray = data.draw(numpy_arrays(zarr_formats=st.just(zarr_format)))
+    zarray = data.draw(arrays(arrays=st.just(nparray), zarr_formats=st.just(zarr_format)))
     assert_array_equal(nparray, zarray[:])
 
 
@@ -31,6 +31,7 @@ def test_basic_indexing(data: st.DataObject) -> None:
     assert_array_equal(nparray, zarray[:])
 
 
+@settings(report_multiple_bugs=False)
 @given(data=st.data())
 def test_vindex(data: st.DataObject) -> None:
     zarray = data.draw(arrays())

zarr/version.py

@@ -0,0 +1,15 @@
+# file generated by setuptools_scm
+# don't change, don't track in version control
+TYPE_CHECKING = False
+if TYPE_CHECKING:
+    VERSION_TUPLE = tuple[int | str, ...]
+else:
+    VERSION_TUPLE = object
+
+version: str
+__version__: str
+__version_tuple__: VERSION_TUPLE
+version_tuple: VERSION_TUPLE
+
+__version__ = version = "2.18.2"
+__version_tuple__ = version_tuple = (2, 18, 2)