Repositories list

• BMI713_Intro_to_HPC

  Public
  Workshop for Intro to Unix

  Shell

  •

  Other

  •14•6•0•0•Updated Sep 24, 2025Sep 24, 2025

• Investigating-chromatin-biology-ChIPseq

  Public
  HTML

  •

  Creative Commons Zero v1.0 Universal

  •39•94•10•0•Updated Sep 23, 2025Sep 23, 2025

• Intro-to-R-flipped

  Public
  R

  •47•89•1•0•Updated Sep 22, 2025Sep 22, 2025

• Intro-to-DGE-Quarto

  Public
  CSS

  •1•0•0•0•Updated Sep 19, 2025Sep 19, 2025

• Training-modules

  Public
  Materials for short, half-day workshops

  Jupyter Notebook

  •

  Other

  •152•337•18•3•Updated Sep 17, 2025Sep 17, 2025

• Intro-to-scRNAseq-Quarto

  Public
  CSS

  •0•0•2•0•Updated Sep 16, 2025Sep 16, 2025

• external

  Public
  SCSS

  •

  Creative Commons Zero v1.0 Universal

  •0•0•1•0•Updated Sep 11, 2025Sep 11, 2025

• main

  Public template
  SCSS

  •

  Other

  •17•55•0•1•Updated Sep 10, 2025Sep 10, 2025

• Intro-to-peak-analysis

  Public
  An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq

  Shell

  •

  Creative Commons Zero v1.0 Universal

  •6•35•7•0•Updated Aug 22, 2025Aug 22, 2025

• Intro-to-DGE

  Public
  HTML

  •87•206•7•0•Updated Aug 15, 2025Aug 15, 2025

• Intro-to-R-Quarto

  Public
  R

  •1•0•3•0•Updated Jul 22, 2025Jul 22, 2025

• FoG_scRNA-seq_viz

  Public
  https://hbctraining.github.io/FoG_scRNA-seq_viz/

  CSS

  •

  Creative Commons Zero v1.0 Universal

  •0•1•0•0•Updated Jun 25, 2025Jun 25, 2025

• Pseudobulk-for-scRNAseq-Quarto

  Public
  CSS

  •0•1•0•0•Updated Jun 17, 2025Jun 17, 2025

• Intro-to-variant-analysis

  Public
  HTML

  •11•33•8•1•Updated May 19, 2025May 19, 2025

• mk_dev

  Public template
  HTML

  •0•0•0•0•Updated May 19, 2025May 19, 2025

• Shell-for-bioinformatics

  Public
  HTML

  •23•48•6•0•Updated May 5, 2025May 5, 2025

• Intro-to-bulk-RNAseq

  Public
  Introduction to bulk RNA-seq

  HTML

  •42•122•7•1•Updated May 2, 2025May 2, 2025

• collaborations

  Public
  Collaborations across campus

  SCSS

  •0•0•0•0•Updated Apr 18, 2025Apr 18, 2025

• Tools-for-reproducible-research

  Public
  R

  •7•11•15•0•Updated Apr 16, 2025Apr 16, 2025

• Intro-to-scRNAseq

  Public
  R

  •200•624•9•0•Updated Apr 15, 2025Apr 15, 2025

• Pseudobulk-for-scRNAseq

  Public
  Approaches for looking at differential expression and differential abundance in scRNA-seq

  R

  •

  Creative Commons Zero v1.0 Universal

  •2•0•12•0•Updated Apr 11, 2025Apr 11, 2025

• spatial_nanocourse

  Public
  Module for Visium HD analysis for Nanocourse organized by SCC

  HTML

  •1•2•3•0•Updated Feb 26, 2025Feb 26, 2025

• Accessing_public_genomic_data

  Public
  Tutorials on accessing public reference and genomic data

  HTML

  •16•30•2•0•Updated Feb 18, 2025Feb 18, 2025

• Intro-to-R-mkdocs

  Public
  Python

  •1•0•2•0•Updated Feb 14, 2025Feb 14, 2025

• Intro-to-shell-fasrc-flipped

  Public archive
  Shell training materials for the FAS-RC cluster

  Shell

  •4•5•1•0•Updated Feb 4, 2025Feb 4, 2025

• EpiR

  Public
  Introduction to R for Epi summer program

  SCSS

  •4•3•0•0•Updated Dec 12, 2024Dec 12, 2024

• github_pages_demo

  Public
  My GitHub Pages Demo

  SCSS

  •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• variant_analysis_germline

  Public
  0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• shinylive_app

  Public
  My shinylive app

  0•1•0•0•Updated Jul 28, 2024Jul 28, 2024

• BBS230B_2023

  Public
  RNA-seq experimental design and analysis

  SCSS

  •5•4•0•0•Updated May 6, 2024May 6, 2024