Aesculus

Quite a few changes in this one, including SimpleITK compatibility, optimizations to improve performance in registration, and bug fixes for Jacobian calculation.

The main new functionality is the label image registration from @ntustison

Thanks to all contributors

What's Changed

• COMP: version bump by @cookpa in #722
• WIP: Fix nanobind memory leaks by @cookpa in #734
• DOC: explain reg transform options by @cookpa in #735
• DOC: example typo by @cookpa in #736
• Build template: delete temporary files by @dyollb in #731
• ENH: Throw exception if image cannot be read by @cookpa in #738
• add SimpleITK.Image to ANTsImage conversion by @dyollb in #726
• DOC: initial transform option by @cookpa in #739
• ENH: Add label iamge registration and tests. by @ntustison in #743
• Make precision (--float) configurable for registration by @evertdeman in #741
• ENH: Test reg precision by @cookpa in #744
• Update mac runner by @cookpa in #745
• BUG: Python str objects don't have astype() by @cookpa in #746
• ENH: Prevent pandas type conversion warning by @cookpa in #748
• COMP: Bump ITK for Windows by @cookpa in #750
• ENH: Change variable name by @ntustison in #751
• ENH: Add functionality for specifying def. xfrm by @ntustison in #752
• WIP: Don't do COM initialization for "syn-only" reg by @cookpa in #757
• DOC: Windows runtime requirements by @cookpa in #759
• DOC: Update conf.py by @cookpa in #756
• ENH: Add explicit identity linear transform. by @ntustison in #761
• Allow numpy datatypes in image_clone by @cookpa in #765
• Neatened things up to be more reader-friendly by @DeanTM in #766
• ENH: Change gradient and radius defaults. by @ntustison in #770
• Turn off hard-coded histogram matching in registration by @cookpa in #768
• No swap numpy dims by @cookpa in #774
• fix: vertical line (xyz-lines) in sagittal image of plot_ortho is flipped by @sai8951 in #762
• fix: vertical line in sagittal view is flipped by @sai8951 in #763
• Fix mac wheels by @cookpa in #749
• BUG: Fix some logic issues. by @ntustison in #777
• ENH: Update ITK Tag. by @ntustison in #778
• ENH: Prevent attempts to iterate over antsImage by @cookpa in #780
• Update ants by @cookpa in #782
• CI: Python 3.13 wheels by @cookpa in #785
• Label geom test by @cookpa in #784
• CI: Build all the wheels weekly by @cookpa in #786
• STYLE: Clean up old build files by @cookpa in #788
• COMP: Update Windows ITK to match others by @cookpa in #789
• DOC: Registration usage by @cookpa in #792
• BUG: Fix logic by @ntustison in #793
• ENH: Subsume typeOfLinearTransform in initialTransforms. by @ntustison in #794
• COMP: Nanobind version limit for older Python by @cookpa in #796
• Probable typo in docstring by @arovai in #799
• CI: Send all wheels to pypi by @cookpa in #800
• ENH: Migrate ANTsPyNet functionality by @ntustison in #802
• DOC: Adding all to get functions added to documentation by @cookpa in #804
• COMP: Install SimpleITK to test by @cookpa in #805
• More sitk imports and tests by @cookpa in #806
• CI: Pin simpleitk to 2.4.1 for Linux, seems 2.5.0 doesn't build by @cookpa in #807
• ENH: one-hot xfrms by @ntustison in #808
• ENH: Remove deprecated variable. by @ntustison in #809
• COMP: Allow modern numpy by @cookpa in #816
• added conda installation instructions by @sarthakpati in #815
• DOC: Updating broken links in README by @lankabelgezogen in #817
• ENH: Add polar decomposition and convergence monitoring. by @ntustison in #819
• ENH: Non-symmetrization. by @ntustison in #820
• COMP: don't use latest scipy by @cookpa in #825
• Jacobian fixes by @cookpa in #823
• ENH: Expand jacobian tests by @cookpa in #826
• COMP: Version bump for release by @cookpa in #801

New Contributors

• @dyollb made their first contribution in #731
• @evertdeman made their first contribution in #741
• @DeanTM made their first contribution in #766
• @sai8951 made their first contribution in #762
• @arovai made their first contribution in #799
• @sarthakpati made their first contribution in #815
• @lankabelgezogen made their first contribution in #817

Full Changelog: v0.5.4...v0.6.0