New python bindings using pybind11 #410

Merged

upibhalla merged 67 commits intoBhallaLab:masterfrom

dilawar:python_binding_using_pybind11

May 1, 2020

Commits on Apr 4, 2020

not a bug.
Dilawar Singh
committed
Turned scripts recieved from harsha into a test case. open #402.
Dilawar Singh
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Renamed wrapper.Neutral to __Wrapper__. With new API, this functionality
Dilawar Singh
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Commits on Apr 6, 2020

Merge branch 'master' into issue_402
dilawar
authored

Commits on Apr 9, 2020

closes #401
Dilawar Singh
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Fixed another bug: -DWTIH_BOOST=ON could not override GSL after WITH_GSL
Dilawar Singh
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Commits on Apr 10, 2020

check is made if solver has space while reading/writing SBML files,small change to port the code to py3
HarshaRani
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Commits on Apr 12, 2020

Squashed commit of the following:
Dilawar Singh
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Minor fixes to pybind11.
Dilawar Singh
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Commits on Apr 15, 2020

Fix #409
Dilawar Singh
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Ready for a draft PR and initial disucssion.
Dilawar Singh
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Return numpy array instead of vector.
Dilawar Singh
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Fixed: moose.le can caused segfault when used on moose.vec
Dilawar Singh
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Fixed: moose.le can caused segfault when used on moose.vec
Dilawar Singh
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Merge branch 'python_binding_using_pybind11' of gitlab.com:dilawar/moose-core into python_binding_using_pybind11
Dilawar Singh
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removed mkdoc.py from pybind11.
Dilawar Singh
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Fixed a pylint error as well python2/python3 compatibility
Dilawar Singh
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wildcard -> reacSystemPath
Dilawar Singh
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Fixed another set.
Dilawar Singh
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Travis fix: Install pytest on OSX as well.
Dilawar Singh
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fix gitlab pipeline
Dilawar Singh
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isinstance is replace to isA added to this, validation.py: error msg is sent back, writeKkit.py: while writting genesis file if any object is not written then errorlog is send/printed which is usef…
HarshaRani
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Commits on Apr 17, 2020

fix test py_run.
Dilawar Singh
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grenerate documentation on the fly.
Dilawar Singh
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Work in progress: __doc__ string from cWork in progress: __doc__ string
Dilawar Singh
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Keeping the C++ type and Python's type name same.
Dilawar Singh
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Cleanup
Dilawar Singh
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pydoc support
Dilawar Singh
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moose.doc is working now.
Dilawar Singh
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update to docs
Dilawar Singh
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more docstring are added [skip ci]
Dilawar Singh
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Added datetime and other string to version_info.
Dilawar Singh
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All functions have docstring.
Dilawar Singh
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loadmodel docstring is added.
Dilawar Singh
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temp commit.
Dilawar Singh
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showmsg is ported to c++.
Dilawar Singh
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Commits on Apr 18, 2020

added more docstring and moved some functions to public api.
Anushree Narjala
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Merge remote-tracking branch 'hrani/master' into python_binding_using_pybind11
Dilawar Singh
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Merge remote-tracking branch 'github/issue_402' into python_binding_using_pybind11
Dilawar Singh
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Merge remote-tracking branch 'github/issue_401' into python_binding_using_pybind11
Dilawar Singh
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Merged hrani changes and mine from new bindings.
Dilawar Singh
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# This is a combination of 2 commits.
Dilawar Singh
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python2 support.
Dilawar Singh
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basestring -> str
Dilawar Singh
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fixes to `pip install`
Dilawar Singh
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Fixed pylint error.
Dilawar Singh
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moose.getField accepts two argument instead of 3. Updated rmogul.py
Dilawar Singh
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fix: compiles with clang++
Dilawar Singh
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travis fixes: OSX
Dilawar Singh
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Commits on Apr 19, 2020

builds on osx locally.
Dilawar Singh
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tests passes with 3.8 as well.
Dilawar Singh
committed
Merge branch 'master' into python_binding_using_pybind11
dilawar
authored
Merge branch 'python_binding_using_pybind11' of https://github.com/dilawar/moose-core into python_binding_using_pybind11
Dilawar Singh
committed
On OSX, stream does not flush properly?
Dilawar Singh
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flush the streams before calling tests...
Dilawar Singh
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Merge branch 'python_binding_using_pybind11' of https://gitlab.com/dilawar/moose-core into python_binding_using_pybind11
Dilawar Singh
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Don't run the trvais/osx
Dilawar Singh
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Merge branch 'python_binding_using_pybind11' of https://github.com/dilawar/moose-core into python_binding_using_pybind11
Dilawar Singh
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Merge branch 'python_binding_using_pybind11' of gitlab.com:dilawar/moose-core into python_binding_using_pybind11
Dilawar Singh
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Fixes to pyrun tests.
Dilawar Singh
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Merge branch 'python_binding_using_pybind11' of github.com:dilawar/moose-core into python_binding_using_pybind11
Dilawar Singh
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Time to post the API.
Dilawar Singh
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listmsg has been moved to C++.
Dilawar Singh
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docstring to writeNML2
Dilawar Singh
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Fixed typo in docstring. Ready to be reviewed.
Dilawar Singh
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showfield and showfields are both supported.
Dilawar Singh
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Added back moose.ce
Dilawar Singh
committed