Closed
Description
I try to use the newest Jabref version, as I get these freezes you reported at (http://help.jabref.org/en/Installation#freezes-when-running-jabref). However, I am continuously getting the following error:
Error: Could not find or load main class org.jabref.JabRefMain
Caused by: java.lang.NoClassDefFoundError: javafx/application/Application
I use Ubuntu 18.04 and try with Jabref version 4.3.1 from https://www.fosshub.com/JabRef.html
So far I tried:
Your install instructions: http://help.jabref.org/en/Installation#jabref-4x-1
They fail at line: Install: sudo apt-get install oracle-java8-installer
You claim at https://github.com/JabRef/jabref#installation that jabref is supporting Java 11 or higher, however in your installation instructions (http://help.jabref.org/en/Installation#jabref-4x-1) you say it does not support java 11.
Nevertheless, I tried java 11 using the default-jdk package including openjfx which was reported to work: http://discourse.jabref.org/t/jabref-4-3-1-with-debian-stable/1197 => no luck, see error above
As you claim supporting 11 or higher I installed oracle java 12 as well (similar to https://tecadmin.net/install-oracle-java-11-ubuntu-18-04-bionic/) => see error above
Then I went back to good old java 8 (openjdk) using your install instructions for openjfx from http://help.jabref.org/en/Installation#jabref-4x-1
The version launches, however I get weird behavior using the search field in the top bar (the cursor does not move, when using the arrow keys) and I get the stacktrace appended at the end of the issue.
For now I switch back to the Jabref version from the Ubuntu packages by using sudo apt-get install jabref
Stacktrace:
File: grouptree.fxml not found, attempting with camel case
File: grouptree.css not found, attempting with camel case
java.lang.NullPointerException
at com.sun.javafx.sg.prism.NGText.renderText(NGText.java:297)
at com.sun.javafx.sg.prism.NGText.renderContent2D(NGText.java:270)
at com.sun.javafx.sg.prism.NGShape.renderContent(NGShape.java:261)
at com.sun.javafx.sg.prism.NGNode.doRender(NGNode.java:2053)
at com.sun.javafx.sg.prism.NGNode.render(NGNode.java:1945)
at com.sun.javafx.sg.prism.NGGroup.renderContent(NGGroup.java:235)
at com.sun.javafx.sg.prism.NGRegion.renderContent(NGRegion.java:577)
at com.sun.javafx.sg.prism.NGNode.renderForClip(NGNode.java:2294)
at com.sun.javafx.sg.prism.NGNode.renderRectClip(NGNode.java:2188)
at com.sun.javafx.sg.prism.NGNode.renderClip(NGNode.java:2214)
at com.sun.javafx.sg.prism.NGNode.doRender(NGNode.java:2047)
at com.sun.javafx.sg.prism.NGNode.render(NGNode.java:1945)
at com.sun.javafx.sg.prism.NGGroup.renderContent(NGGroup.java:235)
at com.sun.javafx.sg.prism.NGRegion.renderContent(NGRegion.java:577)
at com.sun.javafx.sg.prism.NGNode.doRender(NGNode.java:2053)
at com.sun.javafx.sg.prism.NGNode.render(NGNode.java:1945)
at com.sun.javafx.tk.quantum.ViewPainter.doPaint(ViewPainter.java:477)
at com.sun.javafx.tk.quantum.ViewPainter.paintImpl(ViewPainter.java:323)
at com.sun.javafx.tk.quantum.UploadingPainter.run(UploadingPainter.java:134)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.runAndReset(FutureTask.java:308)
at com.sun.javafx.tk.RenderJob.run(RenderJob.java:58)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at com.sun.javafx.tk.quantum.QuantumRenderer$PipelineRunnable.run(QuantumRenderer.java:125)
at java.lang.Thread.run(Thread.java:748)
10:21:32.777 [AWT-EventQueue-1] ERROR org.jabref.FallbackExceptionHandler - Uncaught exception occurred in Thread[AWT-EventQueue-1,6,main]
java.lang.NullPointerException: null
at com.sun.javafx.text.PrismTextLayout.getCaretShape(PrismTextLayout.java:317) ~[jfxrt.jar:?]
at javafx.scene.text.Text$TextAttribute$11.computeValue(Text.java:1787) ~[jfxrt.jar:?]
at javafx.scene.text.Text$TextAttribute$11.computeValue(Text.java:1777) ~[jfxrt.jar:?]
at javafx.beans.binding.ObjectBinding.get(ObjectBinding.java:153) ~[jfxrt.jar:?]
at javafx.beans.binding.ObjectExpression.getValue(ObjectExpression.java:50) ~[jfxrt.jar:?]
at javafx.beans.property.ObjectPropertyBase.get(ObjectPropertyBase.java:132) ~[jfxrt.jar:?]
at com.sun.javafx.scene.control.skin.TextFieldSkin.lambda$new$4(TextFieldSkin.java:233) ~[jfxrt.jar:?]
at com.sun.javafx.binding.ExpressionHelper$SingleInvalidation.fireValueChangedEvent(ExpressionHelper.java:137) ~[jfxrt.jar:?]
at com.sun.javafx.binding.ExpressionHelper.fireValueChangedEvent(ExpressionHelper.java:81) ~[jfxrt.jar:?]
at javafx.beans.property.ObjectPropertyBase.fireValueChangedEvent(ObjectPropertyBase.java:105) ~[jfxrt.jar:?]
at javafx.beans.property.ObjectPropertyBase.markInvalid(ObjectPropertyBase.java:112) ~[jfxrt.jar:?]
at javafx.beans.property.ObjectPropertyBase.access$000(ObjectPropertyBase.java:51) ~[jfxrt.jar:?]
at javafx.beans.property.ObjectPropertyBase$Listener.invalidated(ObjectPropertyBase.java:233) ~[jfxrt.jar:?]
at com.sun.javafx.binding.ExpressionHelper$SingleInvalidation.fireValueChangedEvent(ExpressionHelper.java:137) ~[jfxrt.jar:?]
at com.sun.javafx.binding.ExpressionHelper.fireValueChangedEvent(ExpressionHelper.java:81) ~[jfxrt.jar:?]
at javafx.beans.binding.ObjectBinding.invalidate(ObjectBinding.java:172) ~[jfxrt.jar:?]
at javafx.scene.text.Text.impl_geomChanged(Text.java:769) ~[jfxrt.jar:?]
at javafx.scene.text.Text.needsTextLayout(Text.java:194) ~[jfxrt.jar:?]
at javafx.scene.text.Text.needsFullTextLayout(Text.java:189) ~[jfxrt.jar:?]
at javafx.scene.text.Text.access$200(Text.java:95) ~[jfxrt.jar:?]
at javafx.scene.text.Text$2.invalidated(Text.java:389) ~[jfxrt.jar:?]
at javafx.beans.property.StringPropertyBase.markInvalid(StringPropertyBase.java:109) ~[jfxrt.jar:?]
at javafx.beans.property.StringPropertyBase.access$000(StringPropertyBase.java:49) ~[jfxrt.jar:?]
at javafx.beans.property.StringPropertyBase$Listener.invalidated(StringPropertyBase.java:230) ~[jfxrt.jar:?]
at com.sun.javafx.binding.ExpressionHelper$SingleInvalidation.fireValueChangedEvent(ExpressionHelper.java:137) ~[jfxrt.jar:?]
at com.sun.javafx.binding.ExpressionHelper.fireValueChangedEvent(ExpressionHelper.java:81) ~[jfxrt.jar:?]
at javafx.beans.binding.StringBinding.invalidate(StringBinding.java:171) ~[jfxrt.jar:?]
at com.sun.javafx.binding.BindingHelperObserver.invalidated(BindingHelperObserver.java:51) ~[jfxrt.jar:?]
at com.sun.javafx.binding.ExpressionHelper$Generic.fireValueChangedEvent(ExpressionHelper.java:349) ~[jfxrt.jar:?]
at com.sun.javafx.binding.ExpressionHelper.fireValueChangedEvent(ExpressionHelper.java:81) ~[jfxrt.jar:?]
at javafx.scene.control.TextInputControl$TextProperty.fireValueChangedEvent(TextInputControl.java:1389) ~[jfxrt.jar:?]
at javafx.scene.control.TextInputControl$TextProperty.markInvalid(TextInputControl.java:1393) ~[jfxrt.jar:?]
at javafx.scene.control.TextInputControl$TextProperty.set(TextInputControl.java:1324) ~[jfxrt.jar:?]
at javafx.scene.control.TextInputControl.setText(TextInputControl.java:349) ~[jfxrt.jar:?]
at org.jabref.gui.search.GlobalSearchBar.clearSearch(GlobalSearchBar.java:328) ~[JabRef-4.3.1.jar:?]
at org.jabref.gui.search.GlobalSearchBar.performSearch(GlobalSearchBar.java:356) ~[JabRef-4.3.1.jar:?]
at org.jabref.gui.BasePanel$SearchListener.listen(BasePanel.java:2095) ~[JabRef-4.3.1.jar:?]
at sun.reflect.GeneratedMethodAccessor14.invoke(Unknown Source) ~[?:?]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[?:1.8.0_222]
at java.lang.reflect.Method.invoke(Method.java:498) ~[?:1.8.0_222]
at com.google.common.eventbus.Subscriber.invokeSubscriberMethod(Subscriber.java:87) ~[JabRef-4.3.1.jar:?]
at com.google.common.eventbus.Subscriber$SynchronizedSubscriber.invokeSubscriberMethod(Subscriber.java:144) ~[JabRef-4.3.1.jar:?]
at com.google.common.eventbus.Subscriber$1.run(Subscriber.java:72) ~[JabRef-4.3.1.jar:?]
at com.google.common.util.concurrent.MoreExecutors$DirectExecutor.execute(MoreExecutors.java:398) ~[JabRef-4.3.1.jar:?]
at com.google.common.eventbus.Subscriber.dispatchEvent(Subscriber.java:67) ~[JabRef-4.3.1.jar:?]
at com.google.common.eventbus.Dispatcher$PerThreadQueuedDispatcher.dispatch(Dispatcher.java:108) ~[JabRef-4.3.1.jar:?]
at com.google.common.eventbus.EventBus.post(EventBus.java:212) ~[JabRef-4.3.1.jar:?]
at org.jabref.model.database.BibDatabase.relayEntryChangeEvent(BibDatabase.java:582) ~[JabRef-4.3.1.jar:?]
at sun.reflect.GeneratedMethodAccessor7.invoke(Unknown Source) ~[?:?]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[?:1.8.0_222]
at java.lang.reflect.Method.invoke(Method.java:498) ~[?:1.8.0_222]
at com.google.common.eventbus.Subscriber.invokeSubscriberMethod(Subscriber.java:87) ~[JabRef-4.3.1.jar:?]
at com.google.common.eventbus.Subscriber$SynchronizedSubscriber.invokeSubscriberMethod(Subscriber.java:144) ~[JabRef-4.3.1.jar:?]
at com.google.common.eventbus.Subscriber$1.run(Subscriber.java:72) ~[JabRef-4.3.1.jar:?]
at com.google.common.util.concurrent.MoreExecutors$DirectExecutor.execute(MoreExecutors.java:398) ~[JabRef-4.3.1.jar:?]
at com.google.common.eventbus.Subscriber.dispatchEvent(Subscriber.java:67) ~[JabRef-4.3.1.jar:?]
at com.google.common.eventbus.Dispatcher$PerThreadQueuedDispatcher.dispatch(Dispatcher.java:108) ~[JabRef-4.3.1.jar:?]
at com.google.common.eventbus.EventBus.post(EventBus.java:212) ~[JabRef-4.3.1.jar:?]
at org.jabref.model.entry.BibEntry.clearField(BibEntry.java:483) ~[JabRef-4.3.1.jar:?]
at org.jabref.model.entry.BibEntry.clearField(BibEntry.java:455) ~[JabRef-4.3.1.jar:?]
at org.jabref.migrations.MergeReviewIntoCommentMigration.updateFields(MergeReviewIntoCommentMigration.java:73) ~[JabRef-4.3.1.jar:?]
at org.jabref.migrations.MergeReviewIntoCommentMigration.migrate(MergeReviewIntoCommentMigration.java:66) ~[JabRef-4.3.1.jar:?]
at org.jabref.migrations.MergeReviewIntoCommentMigration.lambda$performMigration$2(MergeReviewIntoCommentMigration.java:32) ~[JabRef-4.3.1.jar:?]
at java.util.stream.ForEachOps$ForEachOp$OfRef.accept(ForEachOps.java:183) ~[?:1.8.0_222]
at java.util.stream.ReferencePipeline$2$1.accept(ReferencePipeline.java:175) ~[?:1.8.0_222]
at java.util.stream.ReferencePipeline$2$1.accept(ReferencePipeline.java:175) ~[?:1.8.0_222]
at java.util.Iterator.forEachRemaining(Iterator.java:116) ~[?:1.8.0_222]
at java.util.Spliterators$IteratorSpliterator.forEachRemaining(Spliterators.java:1801) ~[?:1.8.0_222]
at java.util.stream.AbstractPipeline.copyInto(AbstractPipeline.java:482) ~[?:1.8.0_222]
at java.util.stream.AbstractPipeline.wrapAndCopyInto(AbstractPipeline.java:472) ~[?:1.8.0_222]
at java.util.stream.ForEachOps$ForEachOp.evaluateSequential(ForEachOps.java:150) ~[?:1.8.0_222]
at java.util.stream.ForEachOps$ForEachOp$OfRef.evaluateSequential(ForEachOps.java:173) ~[?:1.8.0_222]
at java.util.stream.AbstractPipeline.evaluate(AbstractPipeline.java:234) ~[?:1.8.0_222]
at java.util.stream.ReferencePipeline.forEach(ReferencePipeline.java:485) ~[?:1.8.0_222]
at org.jabref.migrations.MergeReviewIntoCommentMigration.performMigration(MergeReviewIntoCommentMigration.java:32) ~[JabRef-4.3.1.jar:?]
at org.jabref.gui.importer.actions.MergeReviewIntoCommentAction.performAction(MergeReviewIntoCommentAction.java:21) ~[JabRef-4.3.1.jar:?]
at org.jabref.gui.importer.actions.OpenDatabaseAction.performPostOpenActions(OpenDatabaseAction.java:93) ~[JabRef-4.3.1.jar:?]
at org.jabref.JabRefGUI.openWindow(JabRefGUI.java:186) ~[JabRef-4.3.1.jar:?]
at org.jabref.JabRefGUI.<init>(JabRefGUI.java:67) ~[JabRef-4.3.1.jar:?]
at org.jabref.JabRefMain.lambda$start$1(JabRefMain.java:128) ~[JabRef-4.3.1.jar:?]
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311) [?:1.8.0_222]
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758) [?:1.8.0_222]
at java.awt.EventQueue.access$500(EventQueue.java:97) [?:1.8.0_222]
at java.awt.EventQueue$3.run(EventQueue.java:709) [?:1.8.0_222]
at java.awt.EventQueue$3.run(EventQueue.java:703) [?:1.8.0_222]
at java.security.AccessController.doPrivileged(Native Method) [?:1.8.0_222]
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74) [?:1.8.0_222]
at java.awt.EventQueue.dispatchEvent(EventQueue.java:728) [?:1.8.0_222]
at org.GNOME.Accessibility.AtkWrapper$6.dispatchEvent(AtkWrapper.java:715) [java-atk-wrapper.jar:?]
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205) [?:1.8.0_222]
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116) [?:1.8.0_222]
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105) [?:1.8.0_222]
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) [?:1.8.0_222]
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) [?:1.8.0_222]
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82) [?:1.8.0_222]
Metadata
Metadata
Assignees
Labels
No labels