Laboratory of Bioinformatics and Systems
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MD-ML-Project
MD-ML-Project PublicDeep learning-based approach to discriminate non-trivial conformational changes in molecular dynamics simulations of SARS-CoV-2 spike-ACE2, related to the functional impact (infectivity and immunog…
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Repositories
- MgK-pred Public
- Haplo2D6 Public
- RNApedia-v.26.410 Public
RNApedia is a structured database for protein–RNA interactions. This repository contains the scripts that power its web interface, enabling data exploration, advanced search, and structural analysis. The modular design ensures reproducibility, scalability, and easy reuse by the scientific community.
- COCaDA-web_supplementary Public Forked from rplemos/COCaDA-web_supplementary
This repository contains supplementary materials for the paper "COCaDA-web: an interactive web server for exploratory analysis of interatomic contacts in proteins", by Lemos et al.
- COCaDA Public Forked from rplemos/COCaDA
COCαDA (COntact search pruning by Cα Distance Analysis) is a fast and efficient algorithm for identifying interatomic contacts using flexible distance cutoffs derived from the whole Protein Data Bank. COCαDA is ideal for exploratory and large-scale structural bioinformatics analysis.
- LBS-AVP Public
- rnapedia3 Public
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