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Support for Opaque datasets#114

Merged
valeriupredoi merged 9 commits into
mainfrom
opaque
Oct 7, 2025
Merged

Support for Opaque datasets#114
valeriupredoi merged 9 commits into
mainfrom
opaque

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@bnlawrence

@bnlawrence bnlawrence commented Oct 5, 2025

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Description

Added support for opaque datasets, or at least those written by h5py. Would need some real test files written by someone else to check full support (but I am hopeful it would work).

Closes #88
Closes #70

Checklist

  • This pull request has a descriptive title and labels
  • This pull request has a minimal description (most was discussed in the issue, but a two-liner description is still desirable)
  • Unit tests have been added (if codecov test fails)
  • Any changed dependencies have been added or removed correctly (if need be)
  • If you are working on the documentation, please ensure the current build passes
  • All tests pass

@bnlawrence
bnlawrence requested a review from kmuehlbauer October 5, 2025 10:22
@codecov

codecov Bot commented Oct 5, 2025

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Codecov Report

❌ Patch coverage is 90.32258% with 3 lines in your changes missing coverage. Please review.
✅ Project coverage is 74.05%. Comparing base (c962394) to head (7cb0531).
⚠️ Report is 164 commits behind head on main.

Files with missing lines Patch % Lines
pyfive/datatype_msg.py 81.81% 1 Missing and 1 partial ⚠️
pyfive/h5t.py 88.88% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #114      +/-   ##
==========================================
+ Coverage   73.32%   74.05%   +0.73%     
==========================================
  Files          11       11              
  Lines        2575     2598      +23     
  Branches      401      406       +5     
==========================================
+ Hits         1888     1924      +36     
+ Misses        580      565      -15     
- Partials      107      109       +2     

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@kmuehlbauer kmuehlbauer left a comment

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@bnlawrence This looks like a nice addition. I've added a couple comments and suggestions.

Comment thread pyfive/datatype_msg.py Outdated
Comment thread pyfive/h5d.py Outdated
Comment thread pyfive/datatype_msg.py Outdated
Comment thread pyfive/h5d.py Outdated
@bnlawrence bnlawrence mentioned this pull request Oct 7, 2025
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@kmuehlbauer kmuehlbauer left a comment

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Great work!

@valeriupredoi

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very many thanks @bnlawrence and @kmuehlbauer 🍻

@valeriupredoi
valeriupredoi merged commit 8a44c01 into main Oct 7, 2025
5 of 6 checks passed
@valeriupredoi
valeriupredoi deleted the opaque branch October 7, 2025 12:46
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Successfully merging this pull request may close these issues.

Add support for Opaque Datatypes NotImplementedError: Opaque datatype class not supported after last commit

3 participants