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add customized config and stack files for community GSI/EnKF #245
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,19 @@ | ||
| #!/bin/bash | ||
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| # Compiler/MPI combination | ||
| export HPC_COMPILER=${HPC_COMPILER:-"intel/18.0.5"} | ||
| export HPC_MPI=${HPC_MPI:-"impi/2018.4.274"} | ||
| export HPC_PYTHON=${HPC_PYTHON:-"python/3.9.4"} | ||
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| # Build options | ||
| export USE_SUDO=N | ||
| export PKGDIR=pkg | ||
| export LOGDIR=log | ||
| export OVERWRITE=Y | ||
| export NTHREADS=4 | ||
| export MAKE_CHECK=N | ||
| export MAKE_VERBOSE=N | ||
| export MAKE_CLEAN=N | ||
| export DOWNLOAD_ONLY=N | ||
| export STACK_EXIT_ON_FAIL=Y | ||
| export WGET="wget -nv" | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,277 @@ | ||
| gnu: | ||
| build: NO | ||
| version: 9.3.0 | ||
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| mpi: | ||
| build: NO | ||
| flavor: openmpi | ||
| version: 4.0.1 | ||
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| cmake: | ||
| build: NO | ||
| bootstrap: YES | ||
| version: 3.20.1 | ||
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| jpeg: | ||
| build: NO | ||
| version: 9.1.0 | ||
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| zlib: | ||
| build: NO | ||
| version: 1.2.11 | ||
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| png: | ||
| build: NO | ||
| version: 1.6.35 | ||
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| szip: | ||
| build: NO | ||
| version: 2.1.1 | ||
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| jasper: | ||
| build: NO | ||
| version: 2.0.25 | ||
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| udunits: | ||
| build: NO | ||
| version: 2.2.28 | ||
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| hdf5: | ||
| build: NO | ||
| version: 1.10.6 | ||
| shared: YES | ||
| enable_szip: NO | ||
| enable_zlib: YES | ||
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| pnetcdf: | ||
| build: NO | ||
| version: 1.12.1 | ||
| shared: YES | ||
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| netcdf: | ||
| build: NO | ||
| shared: YES | ||
| enable_pnetcdf: NO | ||
| version_c: 4.7.4 | ||
| version_f: 4.5.3 | ||
| version_cxx: 4.3.1 | ||
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| nccmp: | ||
| build: NO | ||
| version: 1.8.7.0 | ||
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| nco: | ||
| build: NO | ||
| version: 4.9.3 | ||
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| cdo: | ||
| build: NO | ||
| version: 1.9.8 | ||
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| pio: | ||
| build: NO | ||
| version: 2.5.3 | ||
| enable_pnetcdf: NO | ||
| enable_gptl: NO | ||
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| esmf: | ||
| build: NO | ||
| version: 8_1_1 | ||
| shared: YES | ||
| enable_pnetcdf: NO | ||
| debug: NO | ||
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| fms: | ||
| build: NO | ||
| version: 2020.04.03 | ||
| repo: noaa-gfdl | ||
| cmake_opts: "-DGFS_PHYS=ON -D64BIT=ON -DOPENMP=ON" | ||
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| bacio: | ||
| build: YES | ||
| version: v2.4.1 | ||
| install_as: 2.4.1 | ||
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| sigio: | ||
| build: YES | ||
| version: v2.3.2 | ||
| install_as: 2.3.2 | ||
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| sfcio: | ||
| build: YES | ||
| version: v1.4.1 | ||
| install_as: 1.4.1 | ||
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| gfsio: | ||
| build: YES | ||
| version: v1.4.1 | ||
| install_as: 1.4.1 | ||
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| w3nco: | ||
| build: YES | ||
| version: v2.4.1 | ||
| install_as: 2.4.1 | ||
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| sp: | ||
| build: YES | ||
| version: v2.3.3 | ||
| install_as: 2.3.3 | ||
| openmp: ON | ||
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| ip: | ||
| build: YES | ||
| version: v3.3.3 | ||
| install_as: 3.3.3 | ||
| openmp: ON | ||
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| ip2: | ||
| build: YES | ||
| version: v1.1.2 | ||
| install_as: 1.1.2 | ||
| openmp: ON | ||
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| landsfcutil: | ||
| build: NO | ||
| version: v2.4.1 | ||
| install_as: 2.4.1 | ||
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| nemsio: | ||
| build: YES | ||
| version: v2.5.2 | ||
| install_as: 2.5.2 | ||
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| nemsiogfs: | ||
| build: YES | ||
| version: v2.5.3 | ||
| install_as: 2.5.3 | ||
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| w3emc: | ||
| build: YES | ||
| version: v2.7.3 | ||
| install_as: 2.7.3 | ||
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| g2: | ||
| build: YES | ||
| version: v3.4.1 | ||
| install_as: 3.4.1 | ||
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| g2c: | ||
| build: YES | ||
| version: v1.6.2 | ||
| install_as: 1.6.2 | ||
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| g2tmpl: | ||
| build: YES | ||
| version: v1.9.1 | ||
| install_as: 1.9.1 | ||
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| crtm: | ||
| build: YES | ||
| version: v2.3.0 | ||
| install_as: 2.3.0 | ||
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| upp: | ||
| build: NO | ||
| version: upp_v10.0.5 | ||
| install_as: 10.0.5 | ||
| openmp: ON | ||
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| wrf_io: | ||
| build: YES | ||
| version: v1.2.0 | ||
| install_as: 1.2.0 | ||
| openmp: ON | ||
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| bufr: | ||
| build: YES | ||
| version: bufr_v11.5.0 | ||
| install_as: 11.5.0 | ||
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| wgrib2: | ||
| build: NO | ||
| version: v2.0.8-cmake-v6 | ||
| install_as: 2.0.8 | ||
| openmp: ON | ||
| spectral: ON | ||
| ipolates: 3 | ||
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| prod_util: | ||
| build: NO | ||
| version: v1.2.2 | ||
| install_as: 1.2.2 | ||
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| grib_util: | ||
| build: NO | ||
| version: v1.2.2 | ||
| install_as: 1.2.2 | ||
| openmp: ON | ||
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| ncio: | ||
| build: NO | ||
| version: develop | ||
| install_as: 1.0.0 | ||
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| boost: | ||
| build: NO | ||
| version: 1.68.0 | ||
| level: headers-only | ||
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| eigen: | ||
| build: NO | ||
| version: 3.3.7 | ||
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| gsl_lite: | ||
| build: NO | ||
| version: 0.37.0 | ||
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| gptl: | ||
| build: NO | ||
| version: 8.0.2 | ||
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| fftw: | ||
| build: NO | ||
| version: 3.3.8 | ||
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| tau2: | ||
| build: NO | ||
| version: 3.25.1 | ||
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| cgal: | ||
| build: NO | ||
| version: 5.0.2 | ||
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| json: | ||
| build: NO | ||
| version: 3.9.1 | ||
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| json_schema_validator: | ||
| build: NO | ||
| version: 2.1.0 | ||
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| pybind11: | ||
| build: NO | ||
| version: 2.5.0 | ||
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| ecbuild: | ||
| build: NO | ||
| version: release-stable | ||
| repo: jcsda | ||
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| eckit: | ||
| build: NO | ||
| version: release-stable | ||
| repo: jcsda | ||
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| fckit: | ||
| build: NO | ||
| version: release-stable | ||
| repo: jcsda | ||
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| atlas: | ||
| build: NO | ||
| version: release-stable | ||
| repo: jcsda | ||
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| madis: | ||
| build: NO | ||
| version: 4.3 |
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What machine does this config refer to?
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That value is for Cheyenne but these three HPC_* variables are just place holders. Community users needs to change them or set corresponding environments for hpc-stack to work (community users spread around the world, not limited to NOAA and NCAR machines). Thanks!
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Do we need this specific config then? I'm fine with the
stack_comgsi, but I'm not sure this config adds anything.There was a problem hiding this comment.
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I would hope to add them. But I am okay if it is decided to not include them and if so, community users will need to get a copy from the comgsi/hpc-stack fork (not as official as from NOAA-EMC/hpc-stack).
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Maybe a different name then? It's not clear to me that this is meant to be used on Cheyenne, and none of the other settings are unique. You can't just run use this config on any machine. Or is GSI development usually done on Cheyenne?
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Do you have any suggestions on "a different name"? Yes, I mainly develop and test community GSI on Cheyenne.
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How about
config_cheyenne_GSI?There was a problem hiding this comment.
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Ah, I think that may not be appropriate. These two files are NOT used on Cheyenne solely. I also used it on Orion to build libraries for regional GSI/EnKF ( I only need to export HPC_COMPILER and HPC_MPI variables). Users also use them to build their comgsi-flavor hpc-stack, for example on Stampede of TACC, on supercomputers at CSU, etc. I got what you mean. You'd like to see this file is specific to one particular machine. But my intention is to get ready a file specifically customized for building community GSI (mostly for regional applications). If this goal conflicts with some hpc-stack policies, it is fine to not include these two files. Thanks!
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I'm convinced with your explanation.
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Thanks!