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Pull requests: NVIDIA/bionemo-framework

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Pull requests list

Fix test_train_evo2_stops test INCLUDE_NOTEBOOKS_TESTS Add Jupyter notebook validation to the CI pipeline INCLUDE_SLOW_TESTS Add unit tests marked as slow to CI pipeline
#965 opened Jul 1, 2025 by balvisio Loading…
4 of 9 tasks
2
[DRAFT] Add ESM2 Finetuning Benchmark Configuration
#964 opened Jul 1, 2025 by nvmvle • Draft
2 of 14 tasks
1
Bump rust from 1.86.0 to 1.88.0 dependencies Pull requests that update a dependency file docker Pull requests that update docker code
#963 opened Jun 30, 2025 by dependabot bot Loading…
2
Bump 3rdparty/Megatron-LM from fb7c3f8 to 6b70889 dependencies Pull requests that update a dependency file submodules Pull requests that update Submodules code
#962 opened Jun 30, 2025 by dependabot bot Loading…
2
Fix jupyter_core and protobuf vulnerabilities
#960 opened Jun 26, 2025 by balvisio Loading…
1 of 9 tasks
5
[Draft] Reuse Test Data Across Multiple Tests For Geneformer
#955 opened Jun 24, 2025 by nvmvle • Draft
4 of 9 tasks
5
Jwilber/evo2 generate patch
#949 opened Jun 18, 2025 by jwilber Loading…
1 of 9 tasks
2
Jwilber/antons changes not main
#945 opened Jun 16, 2025 by jwilber Loading…
9 tasks
1
Add Unit Test for Genformer Training Script INCLUDE_SLOW_TESTS Add unit tests marked as slow to CI pipeline
#943 opened Jun 16, 2025 by nvmvle Loading…
4 of 9 tasks
10
Get inference actually working
#939 opened Jun 12, 2025 by jstjohn • Draft
9 tasks
3
test effects of prompts on inference
#938 opened Jun 12, 2025 by jwilber • Draft
9 tasks
4
draft: investigate perf oscillation
#937 opened Jun 11, 2025 by dorotat-nv Loading…
9 tasks
1
Support upstream cuHyena changes
#934 opened Jun 9, 2025 by farhadrgh Loading…
9 tasks
7
[Draft] add one logger for e2e metric logging
#928 opened Jun 5, 2025 by dorotat-nv Loading…
1 of 9 tasks
Dorotat/add bigger model geneformer evo2
#921 opened Jun 4, 2025 by dorotat-nv Loading…
1 of 9 tasks
Add a ProteinFastaDataset object for indexed fasta files
#896 opened May 27, 2025 by pstjohn Loading…
Evo2 Mamba
#888 opened May 19, 2025 by jstjohn • Draft
9 tasks
3
adding .obs to scdl
#872 opened May 12, 2025 by polinabinder1 • Draft
4
Fix ESM2 + Geneformer regression
#863 opened May 8, 2025 by dorotat-nv Loading…
9 tasks
1
Updates docs for geneformer training
#838 opened Apr 21, 2025 by jomitchellnv Loading…
9 tasks
1
Build multiarch images for amd64 and arm64 linux targets
#835 opened Apr 17, 2025 by pstjohn Loading…
fix esm2 downstream task finetune config saving issue
#832 opened Apr 15, 2025 by zmsunnyday Loading…
2 of 9 tasks
3
Draft: outline push-to-gitlab-registry step
#830 opened Apr 14, 2025 by jwilber Loading…
3
added duration info to the pytest INCLUDE_NOTEBOOKS_TESTS Add Jupyter notebook validation to the CI pipeline INCLUDE_SLOW_TESTS Add unit tests marked as slow to CI pipeline
#817 opened Apr 10, 2025 by dorotat-nv Loading…
1 of 9 tasks
6
Bump 3rdparty/NeMo from b685967 to 7d7a10c dependencies Pull requests that update a dependency file submodules Pull requests that update Submodules code
#807 opened Apr 7, 2025 by dependabot bot Loading…
3
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