Adopt Pytest v9.0+, RuntimeWarning changes #9868
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| name: Testing | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths-ignore: | |
| - CHANGELOG.rst | |
| - README.rst | |
| - pyproject.toml | |
| - src/xclim/__init__.py | |
| pull_request: | |
| types: | |
| - opened | |
| - reopened | |
| - synchronize | |
| pull_request_review: | |
| types: | |
| - submitted | |
| env: | |
| XCLIM_TESTDATA_BRANCH: v2025.4.29 | |
| concurrency: | |
| # For a given workflow, if we push to the same branch, cancel all previous builds on that branch except on main. | |
| group: "${{ github.workflow }}-${{ github.ref }}" | |
| cancel-in-progress: ${{ github.ref != 'refs/heads/main' }} | |
| permissions: | |
| contents: read | |
| pull-requests: read | |
| jobs: | |
| lint: | |
| name: Lint | |
| runs-on: ubuntu-latest | |
| if: | | |
| (github.event.action != 'labeled') || | |
| (github.event.review.state == 'approved') || | |
| (github.event_name == 'push') | |
| strategy: | |
| matrix: | |
| python-version: [ "3.13" ] | |
| steps: | |
| - name: Harden Runner | |
| uses: step-security/harden-runner@95d9a5deda9de15063e7595e9719c11c38c90ae2 # v2.13.2 | |
| with: | |
| disable-sudo: true | |
| egress-policy: block | |
| allowed-endpoints: > | |
| api.electricitymap.org:443 | |
| api.github.com:443 | |
| api.green-coding.io:443 | |
| files.pythonhosted.org:443 | |
| github.com:443 | |
| index.crates.io:443 | |
| ip-api.com:80 | |
| ipapi.co:443 | |
| proxy.golang.org:443 | |
| pypi.org:443 | |
| sum.golang.org:443 | |
| - name: Start Measurement | |
| uses: green-coding-solutions/eco-ci-energy-estimation@862050e4f01f65b1436e5eca18ba4bd85562f0de # v5.0.0 | |
| with: | |
| task: start-measurement | |
| branch: ${{ github.head_ref || github.ref_name }} | |
| continue-on-error: true | |
| - name: Checkout Repository | |
| uses: actions/checkout@08c6903cd8c0fde910a37f88322edcfb5dd907a8 # v5.0.0 | |
| with: | |
| persist-credentials: false | |
| - name: Set up Python3 | |
| uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # v6.0.0 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| - name: Install CI libraries | |
| run: | | |
| python -m pip install --require-hashes -r CI/requirements_ci.txt | |
| - name: Setup Python Measurement | |
| uses: green-coding-solutions/eco-ci-energy-estimation@862050e4f01f65b1436e5eca18ba4bd85562f0de # v5.0.0 | |
| with: | |
| task: get-measurement | |
| label: 'Environment setup (Python${{ matrix.python-version }}, lint)' | |
| continue-on-error: true | |
| - name: Environment Caching | |
| uses: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830 # v4.3.0 | |
| with: | |
| path: | | |
| ${{ matrix.testdata-cache }} | |
| .tox | |
| key: ${{ runner.os }}-xclim-testdata-${{ env.XCLIM_TESTDATA_BRANCH }}-${{ hashFiles('pyproject.toml', 'tox.ini') }}-lint | |
| - name: Run pylint | |
| run: | | |
| python -m pylint --rcfile=.pylintrc.toml --disable=import-error --exit-zero src/xclim | |
| - name: Run linting suite | |
| run: | | |
| python -m tox -e lint | |
| - name: Tests measurement | |
| uses: green-coding-solutions/eco-ci-energy-estimation@862050e4f01f65b1436e5eca18ba4bd85562f0de # v5.0.0 | |
| with: | |
| task: get-measurement | |
| label: 'Lint (Python${{ matrix.python-version }})' | |
| continue-on-error: true | |
| - name: Show Energy Results | |
| uses: green-coding-solutions/eco-ci-energy-estimation@862050e4f01f65b1436e5eca18ba4bd85562f0de # v5.0.0 | |
| with: | |
| task: display-results | |
| continue-on-error: true | |
| test-preliminary: | |
| name: Python${{ matrix.python-version }} (${{ matrix.os }}) | |
| needs: lint | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| os: [ 'ubuntu-latest' ] | |
| python-version: [ "3.11" ] | |
| testdata-cache: [ '~/.cache/xclim-testdata' ] | |
| markers: [ "-m not slow" ] | |
| steps: | |
| - name: Harden Runner | |
| uses: step-security/harden-runner@95d9a5deda9de15063e7595e9719c11c38c90ae2 # v2.13.2 | |
| with: | |
| disable-sudo: false | |
| egress-policy: block | |
| allowed-endpoints: > | |
| 140.82.113.24:443 | |
| api.electricitymap.org:443 | |
| api.github.com:443 | |
| api.green-coding.io:443 | |
| archive.ubuntu.com:443 | |
| azure.archive.ubuntu.com:80 | |
| coveralls.io:443 | |
| esm.ubuntu.com:443 | |
| files.pythonhosted.org:443 | |
| github.com:443 | |
| ipapi.co:443 | |
| packages.microsoft.com:443 | |
| pypi.org:443 | |
| raw.githubusercontent.com:443 | |
| security.ubuntu.com:443 | |
| - name: Start Energy Measurement | |
| uses: green-coding-solutions/eco-ci-energy-estimation@862050e4f01f65b1436e5eca18ba4bd85562f0de # v5.0.0 | |
| with: | |
| task: start-measurement | |
| branch: ${{ github.head_ref || github.ref_name }} | |
| continue-on-error: true | |
| - name: Checkout Repository | |
| uses: actions/checkout@08c6903cd8c0fde910a37f88322edcfb5dd907a8 # v5.0.0 | |
| with: | |
| persist-credentials: false | |
| - name: Set up Python${{ matrix.python-version }} | |
| uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # v6.0.0 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| - name: Install HDF5 (Linux) | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libhdf5-dev | |
| - name: Install CI libraries | |
| run: | | |
| python -m pip install --require-hashes -r CI/requirements_ci.txt | |
| - name: Environment Setup Energy Measurement | |
| uses: green-coding-solutions/eco-ci-energy-estimation@862050e4f01f65b1436e5eca18ba4bd85562f0de # v5.0.0 | |
| with: | |
| task: get-measurement | |
| label: 'Environment setup (Python${{ matrix.python-version }}, standard)' | |
| continue-on-error: true | |
| - name: Environment Caching | |
| uses: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830 # v4.3.0 | |
| with: | |
| path: | | |
| ${{ matrix.testdata-cache }} | |
| .tox | |
| key: ${{ runner.os }}-xclim-testdata-${{ env.XCLIM_TESTDATA_BRANCH }}-${{ hashFiles('pyproject.toml', 'tox.ini') }}-Python${{ matrix.python-version }} | |
| - name: Test with tox | |
| run: | | |
| python -m tox -e py${{ matrix.python-version }} -- ${{ matrix.markers }} | |
| - name: Tests measurement | |
| uses: green-coding-solutions/eco-ci-energy-estimation@862050e4f01f65b1436e5eca18ba4bd85562f0de # v5.0.0 | |
| with: | |
| task: get-measurement | |
| label: 'Testing with tox (Python${{ matrix.python-version }})' | |
| continue-on-error: true | |
| - name: Show Energy Results | |
| uses: green-coding-solutions/eco-ci-energy-estimation@862050e4f01f65b1436e5eca18ba4bd85562f0de # v5.0.0 | |
| with: | |
| task: display-results | |
| continue-on-error: true | |
| test-pypi: | |
| needs: lint | |
| name: Python${{ matrix.python-version }} (${{ matrix.os }}, ${{ matrix.tox-env }}) | |
| if: | | |
| contains(github.event.pull_request.labels.*.name, 'approved') || | |
| (github.event.review.state == 'approved') || | |
| (github.event_name == 'push') | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| # Linux builds | |
| os: [ 'ubuntu-latest', ] | |
| testdata-cache: [ '~/.cache/xclim-testdata' ] | |
| python-version: [ "3.10", "3.12", "3.13" ] | |
| markers: [ "-m not slow" ] | |
| include: | |
| # macOS build | |
| - os: 'macos-latest' | |
| testdata-cache: '~/Library/Caches/xclim-testdata' | |
| markers: '' # Slow tests | |
| python-version: "3.13" | |
| # Specialized tests | |
| ## Windows with Prefetch | |
| - os: 'windows-latest' | |
| testdata-cache: 'C:\Users\runneradmin\AppData\Local\xclim-testdata\xclim-testdata\Cache' | |
| markers: '' # Markers handled by tox | |
| python-version: "3.13" | |
| tox-env: 'prefetch' | |
| ## Linux offline | |
| - os: 'ubuntu-latest' | |
| testdata-cache: '~/.cache/xclim-testdata' | |
| markers: '' # Markers handled by tox + Slow tests | |
| python-version: "3.11" | |
| tox-env: 'offline' | |
| ## Linux notebooks | |
| - os: 'ubuntu-latest' | |
| testdata-cache: '~/.cache/xclim-testdata' | |
| markers: '' # No markers for notebooks | |
| python-version: "3.11" | |
| tox-env: 'notebooks' | |
| ## Linux doctests | |
| - os: 'ubuntu-latest' | |
| testdata-cache: '~/.cache/xclim-testdata' | |
| markers: '' # No markers for doctests | |
| python-version: "3.12" | |
| tox-env: 'doctests' | |
| steps: | |
| - name: Harden Runner | |
| uses: step-security/harden-runner@95d9a5deda9de15063e7595e9719c11c38c90ae2 # v2.13.2 | |
| with: | |
| disable-sudo: false | |
| egress-policy: audit | |
| # allowed-endpoints: > | |
| # api.electricitymap.org:443 | |
| # api.github.com:443 | |
| # api.green-coding.io:443 | |
| # azure.archive.ubuntu.com:80 | |
| # coveralls.io:443 | |
| # esm.ubuntu.com:443 | |
| # files.pythonhosted.org:443 | |
| # github.com:443 | |
| # hosted-compute-watchdog-prod-iad-02.githubapp.com:443 | |
| # ip-api.com:80 | |
| # ipapi.co:443 | |
| # motd.ubuntu.com:443 | |
| # packages.microsoft.com:443 | |
| # proxy.golang.org:443 | |
| # pypi.org:443 | |
| # raw.githubusercontent.com:443 | |
| # sum.golang.org:443 | |
| - name: Start Energy Measurement | |
| if : ${{ matrix.os == 'ubuntu-latest' }} | |
| uses: green-coding-solutions/eco-ci-energy-estimation@862050e4f01f65b1436e5eca18ba4bd85562f0de # v5.0.0 | |
| with: | |
| task: start-measurement | |
| branch: ${{ github.head_ref || github.ref_name }} | |
| continue-on-error: true | |
| - name: Checkout Repository | |
| uses: actions/checkout@08c6903cd8c0fde910a37f88322edcfb5dd907a8 # v5.0.0 | |
| with: | |
| persist-credentials: false | |
| - name: Install HDF5 (Linux) | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libhdf5-dev | |
| - name: Install HDF5 (macOS) | |
| if: ${{ matrix.os == 'macos-latest' }} | |
| uses: tecolicom/actions-use-homebrew-tools@b9c066b79607fa3d71e0be05d7003bb75fd9ff34 # v1.3 | |
| with: | |
| tools: hdf5 | |
| cache: "yes" | |
| - name: Install Eigen3 (SBCK) | |
| if: ${{ matrix.python-version == '3.11' && matrix.os == 'ubuntu-latest' }} | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libeigen3-dev | |
| - name: Set up Python${{ matrix.python-version }} | |
| uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # v6.0.0 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| - name: Install CI libraries | |
| run: | | |
| python -m pip install --require-hashes -r CI/requirements_ci.txt | |
| - name: Environment Setup Energy Measurement | |
| if : ${{ matrix.os == 'ubuntu-latest' }} | |
| uses: green-coding-solutions/eco-ci-energy-estimation@862050e4f01f65b1436e5eca18ba4bd85562f0de # v5.0.0 | |
| with: | |
| task: get-measurement | |
| label: 'Environment setup (Python${{ matrix.python-version }}, ${{ matrix.tox-env }})' | |
| continue-on-error: true | |
| - name: Environment Caching | |
| # if prefetch is not in tox-env | |
| if: contains(matrix.tox-env, 'prefetch') == false | |
| uses: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830 # v4.3.0 | |
| with: | |
| path: | | |
| ${{ matrix.testdata-cache }} | |
| .tox | |
| key: ${{ runner.os }}-xclim-testdata-${{ env.XCLIM_TESTDATA_BRANCH }}-${{ hashFiles('pyproject.toml', 'tox.ini') }}-Python${{ matrix.python-version }} | |
| - name: Test with tox | |
| if: ${{ matrix.tox-env == '' || matrix.tox-env == null }} | |
| run: | | |
| python -m tox -- ${{ matrix.markers }} | |
| env: | |
| TOX_GH_MAJOR_MINOR: ${{ matrix.python-version }} | |
| - name: Test with tox (specialized tests) | |
| if: ${{ matrix.tox-env != '' && matrix.tox-env != null }} | |
| run: | | |
| python -m tox -e ${{ matrix.tox-env }} -- ${{ matrix.markers }} | |
| - name: Report Coverage | |
| if: ${{ matrix.tox-env == '' || matrix.tox-env == null }} | |
| uses: coverallsapp/github-action@648a8eb78e6d50909eff900e4ec85cab4524a45b # v2.3.6 | |
| with: | |
| flag-name: run-${{ matrix.python-version }}-${{ matrix.os }}-${{ matrix.tox-env }} | |
| parallel: true | |
| - name: Tests measurement | |
| if : ${{ matrix.os == 'ubuntu-latest' }} | |
| uses: green-coding-solutions/eco-ci-energy-estimation@862050e4f01f65b1436e5eca18ba4bd85562f0de # v5.0.0 | |
| with: | |
| task: get-measurement | |
| label: 'Testing with tox (Python${{ matrix.python-version }}, ${{ matrix.tox-env }})' | |
| continue-on-error: true | |
| - name: Show Energy Results | |
| if : ${{ matrix.os == 'ubuntu-latest' }} | |
| uses: green-coding-solutions/eco-ci-energy-estimation@862050e4f01f65b1436e5eca18ba4bd85562f0de # v5.0.0 | |
| with: | |
| task: display-results | |
| continue-on-error: true | |
| test-conda: | |
| needs: lint | |
| name: Python${{ matrix.python-version }} (${{ matrix.os }}, conda) | |
| if: | | |
| contains(github.event.pull_request.labels.*.name, 'approved') || | |
| (github.event.review.state == 'approved') || | |
| (github.event_name == 'push') | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| os: [ 'ubuntu-latest' ] | |
| python-version: [ "3.11", "3.13" ] | |
| testdata-cache: [ '~/.cache/xclim-testdata' ] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Harden Runner | |
| uses: step-security/harden-runner@95d9a5deda9de15063e7595e9719c11c38c90ae2 # v2.13.2 | |
| with: | |
| disable-sudo: true | |
| egress-policy: block | |
| allowed-endpoints: > | |
| api.electricitymap.org:443 | |
| api.github.com:443 | |
| api.green-coding.io:443 | |
| conda.anaconda.org:443 | |
| coveralls.io:443 | |
| files.pythonhosted.org:443 | |
| github.com:443 | |
| ipapi.co:443 | |
| objects.githubusercontent.com:443 | |
| pypi.org:443 | |
| raw.githubusercontent.com:443 | |
| release-assets.githubusercontent.com:443 | |
| - name: Start Energy Measurement | |
| uses: green-coding-solutions/eco-ci-energy-estimation@862050e4f01f65b1436e5eca18ba4bd85562f0de # v5.0.0 | |
| with: | |
| task: start-measurement | |
| branch: ${{ github.head_ref || github.ref_name }} | |
| continue-on-error: true | |
| - name: Checkout Repository | |
| uses: actions/checkout@08c6903cd8c0fde910a37f88322edcfb5dd907a8 # v5.0.0 | |
| with: | |
| persist-credentials: false | |
| - name: Setup Conda (Micromamba) with Python${{ matrix.python-version }} | |
| uses: mamba-org/setup-micromamba@add3a49764cedee8ee24e82dfde87f5bc2914462 # v2.0.7 | |
| with: | |
| cache-downloads: true | |
| cache-environment: true | |
| environment-file: environment.yml | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| - name: Test Data Caching | |
| uses: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830 # v4.3.0 | |
| with: | |
| path: | | |
| ${{ matrix.testdata-cache }} | |
| key: ${{ runner.os }}-xclim-testdata-${{ env.XCLIM_TESTDATA_BRANCH }}-conda-${{ hashFiles('pyproject.toml', 'tox.ini') }}-Python${{ matrix.python-version }} | |
| - name: Install xclim | |
| run: | | |
| python -m pip install --no-user --editable . | |
| - name: Check versions | |
| run: | | |
| micromamba list | |
| xclim show_version_info | |
| python -m pip check || true | |
| - name: Environment Setup Energy Measurement | |
| uses: green-coding-solutions/eco-ci-energy-estimation@862050e4f01f65b1436e5eca18ba4bd85562f0de # v5.0.0 | |
| with: | |
| task: get-measurement | |
| label: 'Environment setup (conda, Python${{ matrix.python-version }})' | |
| continue-on-error: true | |
| - name: Test with pytest | |
| run: | | |
| python -m pytest --numprocesses=logical --durations=10 --cov=xclim --cov-report=lcov | |
| - name: Report Coverage | |
| uses: coverallsapp/github-action@648a8eb78e6d50909eff900e4ec85cab4524a45b # v2.3.6 | |
| with: | |
| flag-name: run-{{ matrix.python-version }}-conda | |
| parallel: true | |
| - name: Tests measurement | |
| uses: green-coding-solutions/eco-ci-energy-estimation@862050e4f01f65b1436e5eca18ba4bd85562f0de # v5.0.0 | |
| with: | |
| task: get-measurement | |
| label: 'Testing with pytest (conda, Python${{ matrix.python-version }})' | |
| continue-on-error: true | |
| - name: Show Energy Results | |
| uses: green-coding-solutions/eco-ci-energy-estimation@862050e4f01f65b1436e5eca18ba4bd85562f0de # v5.0.0 | |
| with: | |
| task: display-results | |
| continue-on-error: true | |
| finish: | |
| name: Finish | |
| needs: | |
| - test-preliminary | |
| - test-pypi | |
| - test-conda | |
| runs-on: ubuntu-latest | |
| permissions: | |
| pull-requests: write | |
| steps: | |
| - name: Harden Runner | |
| uses: step-security/harden-runner@95d9a5deda9de15063e7595e9719c11c38c90ae2 # v2.13.2 | |
| with: | |
| egress-policy: block | |
| allowed-endpoints: > | |
| api.electricitymap.org:443 | |
| api.github.com:443 | |
| api.green-coding.io:443 | |
| coveralls.io:443 | |
| files.pythonhosted.org:443 | |
| github.com:443 | |
| ip-api.com:80 | |
| ipapi.co:443 | |
| objects.githubusercontent.com:443 | |
| proxy.golang.org:443 | |
| pypi.org:443 | |
| release-assets.githubusercontent.com:443 | |
| sum.golang.org:443 | |
| - name: Start Energy Measurement | |
| uses: green-coding-solutions/eco-ci-energy-estimation@862050e4f01f65b1436e5eca18ba4bd85562f0de # v5.0.0 | |
| with: | |
| task: start-measurement | |
| branch: ${{ github.head_ref || github.ref_name }} | |
| continue-on-error: true | |
| - name: Coveralls Finished | |
| uses: coverallsapp/github-action@648a8eb78e6d50909eff900e4ec85cab4524a45b # v2.3.6 | |
| with: | |
| parallel-finished: true | |
| - name: Finish measurement | |
| uses: green-coding-solutions/eco-ci-energy-estimation@862050e4f01f65b1436e5eca18ba4bd85562f0de # v5.0.0 | |
| with: | |
| task: get-measurement | |
| label: 'Finish Run' | |
| continue-on-error: true | |
| - name: Show Energy Results | |
| uses: green-coding-solutions/eco-ci-energy-estimation@862050e4f01f65b1436e5eca18ba4bd85562f0de # v5.0.0 | |
| with: | |
| task: display-results | |
| continue-on-error: true |