DeepRVAT Pipeline Tests π§¬π§ͺπ»π§βπ¬ #536
pipeline-tests.yml
on: push
Smoke-Annotation-Pipeline
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Run-Pipeline
2m 33s
Reference-Output-Pretrained-Regenie
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Run-Pipeline
2m 34s
Smoke-Association-Testing-Pretrained-Regenie
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Run-Pipeline
2m 9s
Smoke-Association-Testing-Training
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Run-Pipeline
2m 33s
Smoke-Preprocessing-No-QC
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Run-Pipeline
4m 36s
Smoke-Preprocessing-With-QC
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Run-Pipeline
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Smoke-RunTraining
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Run-Pipeline
2m 35s
Reference-Output-Training
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Run-Pipeline
2m 33s
Smoke-Seed-Gene-Discovery
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Run-Pipeline
2m 34s
Smoke-Association-Testing-Training-Regenie
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Run-Pipeline
2m 34s
Reference-Output-Pretrained
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Run-Pipeline
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Smoke-Association-Testing-Pretrained
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Run-Pipeline
2m 33s
Smoke-GenerateConfig-Training
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Run-Pipeline
2m 34s
Smoke-GenerateConfig-Training-AssociationTesting
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Run-Pipeline
2m 33s
Smoke-GenerateConfig-PreTrained
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Run-Pipeline
2m 34s
Pipeline-Annotation
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Run-Pipeline
Pipeline-Tests-Association-Testing-Pretrained-Regenie
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Run-Pipeline
Pipeline-Tests-Association-Testing-Training
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Run-Pipeline
Pipeline-Tests-Preprocessing-No-QC
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Run-Pipeline
Pipeline-Tests-Preprocessing-With-QC
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Run-Pipeline
Pipeline-Tests-RunTraining
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Run-Pipeline
Pipeline-Tests-Seed-Gene-Discovery
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Run-Pipeline
Pipeline-Tests-Training-Association-Testing-Regenie
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Run-Pipeline
Pipeline-Tests-Training-Association-Testing
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Run-Pipeline
Annotations
59 errors and 46 warnings
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Smoke-Association-Testing-Pretrained-Regenie / Run-Pipeline
ENOTEMPTY: directory not empty, rmdir '/home/runner/micromamba/pkgs/mkl-2022.1.0-h84fe81f_915'
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Smoke-Association-Testing-Pretrained-Regenie / Run-Pipeline
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Smoke-Association-Testing-Pretrained-Regenie / Run-Pipeline
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Reference-Output-Pretrained / Run-Pipeline
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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Reference-Output-Pretrained / Run-Pipeline
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Reference-Output-Pretrained / Run-Pipeline
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Smoke-Association-Testing-Training / Run-Pipeline
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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Smoke-Association-Testing-Training / Run-Pipeline
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Smoke-Annotation-Pipeline / Run-Pipeline
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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Smoke-Association-Testing-Training / Run-Pipeline
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Smoke-Annotation-Pipeline / Run-Pipeline
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Smoke-Annotation-Pipeline / Run-Pipeline
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Reference-Output-Training / Run-Pipeline
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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Reference-Output-Training / Run-Pipeline
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Reference-Output-Training / Run-Pipeline
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Smoke-GenerateConfig-Training / Run-Pipeline
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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Smoke-GenerateConfig-Training / Run-Pipeline
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Smoke-GenerateConfig-Training / Run-Pipeline
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Smoke-Association-Testing-Pretrained / Run-Pipeline
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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Smoke-Association-Testing-Pretrained / Run-Pipeline
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Smoke-Association-Testing-Pretrained / Run-Pipeline
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Reference-Output-Pretrained-Regenie / Run-Pipeline
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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Reference-Output-Pretrained-Regenie / Run-Pipeline
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Reference-Output-Pretrained-Regenie / Run-Pipeline
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Smoke-Seed-Gene-Discovery / Run-Pipeline
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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Smoke-Seed-Gene-Discovery / Run-Pipeline
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Smoke-Seed-Gene-Discovery / Run-Pipeline
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Smoke-GenerateConfig-PreTrained / Run-Pipeline
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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Smoke-GenerateConfig-PreTrained / Run-Pipeline
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Smoke-GenerateConfig-PreTrained / Run-Pipeline
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Smoke-GenerateConfig-Training-AssociationTesting / Run-Pipeline
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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Smoke-GenerateConfig-Training-AssociationTesting / Run-Pipeline
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Smoke-GenerateConfig-Training-AssociationTesting / Run-Pipeline
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Smoke-Association-Testing-Training-Regenie / Run-Pipeline
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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Smoke-Association-Testing-Training-Regenie / Run-Pipeline
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Smoke-Association-Testing-Training-Regenie / Run-Pipeline
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Smoke-RunTraining / Run-Pipeline
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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Smoke-RunTraining / Run-Pipeline
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Smoke-RunTraining / Run-Pipeline
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Smoke-Preprocessing-With-QC / Run-Pipeline
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Smoke-Preprocessing-With-QC / Run-Pipeline
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Smoke-Preprocessing-No-QC / Run-Pipeline
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Smoke-Preprocessing-No-QC / Run-Pipeline
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DeepRVAT Pipeline Tests
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DeepRVAT Pipeline Tests
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DeepRVAT Pipeline Tests
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DeepRVAT Pipeline Tests
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DeepRVAT Pipeline Tests
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DeepRVAT Pipeline Tests
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DeepRVAT Pipeline Tests
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DeepRVAT Pipeline Tests
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DeepRVAT Pipeline Tests
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DeepRVAT Pipeline Tests
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DeepRVAT Pipeline Tests
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DeepRVAT Pipeline Tests
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DeepRVAT Pipeline Tests
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DeepRVAT Pipeline Tests
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DeepRVAT Pipeline Tests
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DeepRVAT Pipeline Tests
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Smoke-Association-Testing-Pretrained-Regenie / Run-Pipeline
Failed to restore: getCacheEntry failed: Request timeout: /k7svAK7PQ8Wq7wOuBhdWcSjAmgJBpBK5vBY4HP9rIOcbcmtPe8/_apis/artifactcache/cache?keys=micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538&version=bfc2ce9b31b8972a88ac36bcd391ba81bdfaff004c48f84ff75b9afb4e540ef4
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Smoke-Association-Testing-Pretrained-Regenie / Run-Pipeline
Failed to restore: getCacheEntry failed: Request timeout: /k7svAK7PQ8Wq7wOuBhdWcSjAmgJBpBK5vBY4HP9rIOcbcmtPe8/_apis/artifactcache/cache?keys=micromamba-downloads--linux-64&version=fd589871226f2427db40904ab3f139f6e9fe542d5228eeb2a790fd83584854df
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Reference-Output-Pretrained / Run-Pipeline
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Reference-Output-Pretrained / Run-Pipeline
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Reference-Output-Pretrained / Run-Pipeline
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Smoke-Association-Testing-Training / Run-Pipeline
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Smoke-Association-Testing-Training / Run-Pipeline
Failed to restore: getCacheEntry failed: Request timeout: /k7svAK7PQ8Wq7wOuBhdWcSjAmgJBpBK5vBY4HP9rIOcbcmtPe8/_apis/artifactcache/cache?keys=micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538&version=bfc2ce9b31b8972a88ac36bcd391ba81bdfaff004c48f84ff75b9afb4e540ef4
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Smoke-Association-Testing-Training / Run-Pipeline
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Smoke-Annotation-Pipeline / Run-Pipeline
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Smoke-Annotation-Pipeline / Run-Pipeline
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Smoke-Annotation-Pipeline / Run-Pipeline
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Reference-Output-Training / Run-Pipeline
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Reference-Output-Training / Run-Pipeline
Failed to restore: getCacheEntry failed: Request timeout: /k7svAK7PQ8Wq7wOuBhdWcSjAmgJBpBK5vBY4HP9rIOcbcmtPe8/_apis/artifactcache/cache?keys=micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538&version=bfc2ce9b31b8972a88ac36bcd391ba81bdfaff004c48f84ff75b9afb4e540ef4
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Reference-Output-Training / Run-Pipeline
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Smoke-GenerateConfig-Training / Run-Pipeline
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Smoke-GenerateConfig-Training / Run-Pipeline
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Smoke-GenerateConfig-Training / Run-Pipeline
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Smoke-Association-Testing-Pretrained / Run-Pipeline
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Smoke-Association-Testing-Pretrained / Run-Pipeline
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Smoke-Association-Testing-Pretrained / Run-Pipeline
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Reference-Output-Pretrained-Regenie / Run-Pipeline
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Reference-Output-Pretrained-Regenie / Run-Pipeline
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Reference-Output-Pretrained-Regenie / Run-Pipeline
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Smoke-Seed-Gene-Discovery / Run-Pipeline
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Smoke-Seed-Gene-Discovery / Run-Pipeline
Failed to restore: getCacheEntry failed: Request timeout: /k7svAK7PQ8Wq7wOuBhdWcSjAmgJBpBK5vBY4HP9rIOcbcmtPe8/_apis/artifactcache/cache?keys=micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538&version=bfc2ce9b31b8972a88ac36bcd391ba81bdfaff004c48f84ff75b9afb4e540ef4
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Smoke-Seed-Gene-Discovery / Run-Pipeline
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Smoke-GenerateConfig-PreTrained / Run-Pipeline
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Smoke-GenerateConfig-PreTrained / Run-Pipeline
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Smoke-GenerateConfig-PreTrained / Run-Pipeline
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Smoke-GenerateConfig-Training-AssociationTesting / Run-Pipeline
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Smoke-GenerateConfig-Training-AssociationTesting / Run-Pipeline
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Smoke-GenerateConfig-Training-AssociationTesting / Run-Pipeline
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Smoke-Association-Testing-Training-Regenie / Run-Pipeline
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Smoke-Association-Testing-Training-Regenie / Run-Pipeline
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Smoke-Association-Testing-Training-Regenie / Run-Pipeline
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Smoke-RunTraining / Run-Pipeline
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Smoke-RunTraining / Run-Pipeline
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Smoke-RunTraining / Run-Pipeline
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Smoke-Preprocessing-With-QC / Run-Pipeline
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Smoke-Preprocessing-With-QC / Run-Pipeline
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Smoke-Preprocessing-With-QC / Run-Pipeline
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Smoke-Preprocessing-With-QC / Run-Pipeline
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Smoke-Preprocessing-No-QC / Run-Pipeline
Failed to save: reserveCache failed: Request timeout: /k7svAK7PQ8Wq7wOuBhdWcSjAmgJBpBK5vBY4HP9rIOcbcmtPe8/_apis/artifactcache/caches
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Smoke-Preprocessing-No-QC / Run-Pipeline
Failed to save: reserveCache failed: Request timeout: /k7svAK7PQ8Wq7wOuBhdWcSjAmgJBpBK5vBY4HP9rIOcbcmtPe8/_apis/artifactcache/caches
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Smoke-Preprocessing-No-QC / Run-Pipeline
Failed to restore: getCacheEntry failed: Request timeout: /k7svAK7PQ8Wq7wOuBhdWcSjAmgJBpBK5vBY4HP9rIOcbcmtPe8/_apis/artifactcache/cache?keys=micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-34fca0b51137e2739a0b709a4c77bdbd1820b5d497716e3b9acfc0d841556dbb&version=80b6046ab9f371642e381ef597401918dc7a5adb42934b489fdc49796fbe77f9
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Smoke-Preprocessing-No-QC / Run-Pipeline
Failed to restore: getCacheEntry failed: Request timeout: /k7svAK7PQ8Wq7wOuBhdWcSjAmgJBpBK5vBY4HP9rIOcbcmtPe8/_apis/artifactcache/cache?keys=micromamba-downloads--linux-64&version=fd589871226f2427db40904ab3f139f6e9fe542d5228eeb2a790fd83584854df
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