-
Notifications
You must be signed in to change notification settings - Fork 0
Add support for Cell Ranger #12
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Merged
Merged
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
73178d4 to
a529f1c
Compare
f687545 to
0f5efb8
Compare
8dca44e to
3ebd549
Compare
bef559e to
be7023d
Compare
c095d38 to
7945413
Compare
…putMixin" This reverts commit 176cb04.
fd17fc5 to
48b2b1a
Compare
Eliminate RemoveTaskOutputOnFailureMixin.
arteymix
commented
Oct 24, 2025
arteymix
commented
Oct 24, 2025
3 tasks
Make srun binary configurable Add individual configuration sections for each scheduler. Add a test configuration to use for the CI.
Simply use the task ID in the comment instead of nesting a JSON payload. Cache squeue output to minimize the number of calls to squeue, especially when multiple workers are overseeing Slurm jobs. Peform more validation with graceful logging when the squeue payload does not match expectations.
Use a patched LocalTarget for every tasks.
0b6a708 to
ab6857f
Compare
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
No description provided.