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@arteymix arteymix changed the title Feature improved sratools support Improve support for sratools Sep 22, 2025
@arteymix arteymix force-pushed the feature-improved-sratools-support branch from 73178d4 to a529f1c Compare September 24, 2025 00:23
@arteymix arteymix force-pushed the feature-improved-sratools-support branch from f687545 to 0f5efb8 Compare October 6, 2025 17:24
@arteymix arteymix force-pushed the feature-improved-sratools-support branch 3 times, most recently from 8dca44e to 3ebd549 Compare October 18, 2025 00:15
@arteymix arteymix changed the title Improve support for sratools Add support for Cell Ranger Oct 18, 2025
@arteymix arteymix force-pushed the feature-improved-sratools-support branch 6 times, most recently from bef559e to be7023d Compare October 22, 2025 01:48
@arteymix arteymix force-pushed the feature-improved-sratools-support branch 2 times, most recently from c095d38 to 7945413 Compare October 22, 2025 05:06
@arteymix arteymix force-pushed the feature-improved-sratools-support branch 2 times, most recently from fd17fc5 to 48b2b1a Compare October 22, 2025 17:33
@arteymix arteymix self-assigned this Oct 25, 2025
arteymix and others added 19 commits October 27, 2025 09:20
Make srun binary configurable

Add individual configuration sections for each scheduler.

Add a test configuration to use for the CI.
Simply use the task ID in the comment instead of nesting a JSON payload.

Cache squeue output to minimize the number of calls to squeue,
especially when multiple workers are overseeing Slurm jobs.

Peform more validation with graceful logging when the squeue payload
does not match expectations.
Use a patched LocalTarget for every tasks.
@arteymix arteymix force-pushed the feature-improved-sratools-support branch from 0b6a708 to ab6857f Compare October 27, 2025 16:20
@arteymix arteymix merged commit 0ea1b90 into master Oct 27, 2025
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2 participants