Ensure that the subprocess for wrapped tools is always destroyed #227

	name: Python Package using Conda

	on: [push]

	jobs:
	build-linux:
	runs-on: ubuntu-latest
	strategy:
	max-parallel: 5
	defaults:
	run:
	shell: bash -el {0}

	steps:
	- uses: actions/checkout@v4
	- uses: conda-incubator/setup-miniconda@v3
	with:
	activate-environment: rnaseq-pipeline
	environment-file: environment.yml
	- name: Install package
	run: \|
	pip install .[gsheet,webviewer]
	- name: Build shm cleanup script
	run: \|
	make -C scripts
	- name: Configure the pipeline
	run: \|
	cp tests/luigi.cfg ./
	- name: Test with pytest
	run: \|
	conda install pytest
	pytest --ignore tests/test_webviewer.py

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