Problem of LoadImage #8617
Description
Describe the bug
run LoadImage report error
Traceback (most recent call last):
File "/home/zhengwenjun/pycharm-2025.2.4/plugins/python-ce/helpers/pydev/pydevconsole.py", line 364, in runcode
coro = func()
File "", line 1, in
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 274, in call
else:
RuntimeError: LoadImage cannot find a suitable reader for file: /mnt/sdd1/MRI_foundation_model_dataset/dataset/cervical_cancer/cevical cancer/dongguanrenyi/71929751/005_t2_haste_fs_tra_p2_320.nii.gz.
Please install the reader libraries, see also the installation instructions:
https://docs.monai.io/en/latest/installation.html#installing-the-recommended-dependencies.
The current registered: [<monai.data.image_reader.PydicomReader object at 0x7f1e29bfa650>, <monai.data.image_reader.ITKReader object at 0x7f1e29bfa9b0>, <monai.data.image_reader.NrrdReader object at 0x7f1e29bfa6b0>, <monai.data.image_reader.NumpyReader object at 0x7f1e29bf8580>, <monai.data.image_reader.PILReader object at 0x7f1e29bf9f00>, <monai.data.image_reader.NibabelReader object at 0x7f1e29bf8100>, <monai.data.image_reader.NibabelReader object at 0x7f1e29bf9660>].
Traceback (most recent call last):
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 396, in optional_import
msg = descriptor.format(actual_cmd)
File "/home/zhengwenjun/pycharm-2025.2.4/plugins/python-ce/helpers/pydev/_pydev_bundle/pydev_import_hook.py", line 21, in do_import
module = self._system_import(name, *args, **kwargs)
monai.utils.module.OptionalImportError: import nibabel (No module named 'nibabel').
For details about installing the optional dependencies, please visit:
https://docs.monai.io/en/latest/installation.html#installing-the-recommended-dependencies
Traceback (most recent call last):
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 908, in read
filename: the file path of the image.
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 396, in optional_import
msg = descriptor.format(actual_cmd)
File "/home/zhengwenjun/pycharm-2025.2.4/plugins/python-ce/helpers/pydev/_pydev_bundle/pydev_import_hook.py", line 21, in do_import
module = self._system_import(name, *args, **kwargs)
monai.utils.module.OptionalImportError: import nibabel (No module named 'nibabel').
For details about installing the optional dependencies, please visit:
https://docs.monai.io/en/latest/installation.html#installing-the-recommended-dependencies
Traceback (most recent call last):
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 1165, in read
def _get_spatial_shape(self, img):
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/PIL/Image.py", line 3498, in open
raise UnidentifiedImageError(msg)
PIL.UnidentifiedImageError: cannot identify image file '/mnt/sdd1/MRI_foundation_model_dataset/dataset/cervical_cancer/cevical cancer/dongguanrenyi/71929751/005_t2_haste_fs_tra_p2_320.nii.gz'
Traceback (most recent call last):
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/numpy/lib/npyio.py", line 441, in load
return pickle.load(fid, **pickle_kwargs)
_pickle.UnpicklingError: invalid load key, '\x1f'.
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 1068, in read
return has_nib and is_supported_format(filename, suffixes)
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/numpy/lib/npyio.py", line 443, in load
raise pickle.UnpicklingError(
_pickle.UnpicklingError: Failed to interpret file '/mnt/sdd1/MRI_foundation_model_dataset/dataset/cervical_cancer/cevical cancer/dongguanrenyi/71929751/005_t2_haste_fs_tra_p2_320.nii.gz' as a pickle
Traceback (most recent call last):
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 1289, in read
When loading a list of files, they are stacked together at a new dimension as the first dimension,
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 1289, in read
When loading a list of files, they are stacked together at a new dimension as the first dimension,
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 1289, in read
When loading a list of files, they are stacked together at a new dimension as the first dimension,
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 1289, in read
When loading a list of files, they are stacked together at a new dimension as the first dimension,
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 1289, in read
When loading a list of files, they are stacked together at a new dimension as the first dimension,
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 1289, in read
When loading a list of files, they are stacked together at a new dimension as the first dimension,
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 1289, in read
When loading a list of files, they are stacked together at a new dimension as the first dimension,
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 1289, in read
When loading a list of files, they are stacked together at a new dimension as the first dimension,
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 1289, in read
When loading a list of files, they are stacked together at a new dimension as the first dimension,
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 1289, in read
When loading a list of files, they are stacked together at a new dimension as the first dimension,
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 396, in optional_import
msg = descriptor.format(actual_cmd)
File "/home/zhengwenjun/pycharm-2025.2.4/plugins/python-ce/helpers/pydev/_pydev_bundle/pydev_import_hook.py", line 21, in do_import
module = self._system_import(name, *args, **kwargs)
monai.utils.module.OptionalImportError: import nrrd (No module named 'nrrd').
For details about installing the optional dependencies, please visit:
https://docs.monai.io/en/latest/installation.html#installing-the-recommended-dependencies
Traceback (most recent call last):
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 258, in read
name = name[0] if len(name) == 1 else name # type: ignore
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 258, in read
name = name[0] if len(name) == 1 else name # type: ignore
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 258, in read
name = name[0] if len(name) == 1 else name # type: ignore
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 258, in read
name = name[0] if len(name) == 1 else name # type: ignore
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 258, in read
name = name[0] if len(name) == 1 else name # type: ignore
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 258, in read
name = name[0] if len(name) == 1 else name # type: ignore
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 258, in read
name = name[0] if len(name) == 1 else name # type: ignore
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 258, in read
name = name[0] if len(name) == 1 else name # type: ignore
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 258, in read
name = name[0] if len(name) == 1 else name # type: ignore
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 258, in read
name = name[0] if len(name) == 1 else name # type: ignore
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 396, in optional_import
msg = descriptor.format(actual_cmd)
File "/home/zhengwenjun/pycharm-2025.2.4/plugins/python-ce/helpers/pydev/_pydev_bundle/pydev_import_hook.py", line 21, in do_import
module = self._system_import(name, *args, **kwargs)
monai.utils.module.OptionalImportError: import itk (No module named 'itk').
For details about installing the optional dependencies, please visit:
https://docs.monai.io/en/latest/installation.html#installing-the-recommended-dependencies
Traceback (most recent call last):
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 477, in read
f = kvikio.CuFile(tmp_file_name, "r")
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 477, in read
f = kvikio.CuFile(tmp_file_name, "r")
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 477, in read
f = kvikio.CuFile(tmp_file_name, "r")
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 477, in read
f = kvikio.CuFile(tmp_file_name, "r")
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 477, in read
f = kvikio.CuFile(tmp_file_name, "r")
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 477, in read
f = kvikio.CuFile(tmp_file_name, "r")
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 477, in read
f = kvikio.CuFile(tmp_file_name, "r")
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 477, in read
f = kvikio.CuFile(tmp_file_name, "r")
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 477, in read
f = kvikio.CuFile(tmp_file_name, "r")
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/transforms/io/array.py", line 259, in call
else:
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/data/image_reader.py", line 477, in read
f = kvikio.CuFile(tmp_file_name, "r")
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 437, in getattr
File "/home/zhengwenjun/.conda/envs/report_generation/lib/python3.10/site-packages/monai/utils/module.py", line 396, in optional_import
msg = descriptor.format(actual_cmd)
File "/home/zhengwenjun/pycharm-2025.2.4/plugins/python-ce/helpers/pydev/_pydev_bundle/pydev_import_hook.py", line 21, in do_import
module = self._system_import(name, *args, **kwargs)
monai.utils.module.OptionalImportError: import pydicom (No module named 'pydicom').
For details about installing the optional dependencies, please visit:
https://docs.monai.io/en/latest/installation.html#installing-the-recommended-dependencies
To Reproduce
Steps to reproduce the behavior:
- Go to '...'
- Install 'monai and 'monai[all]'.'
- Run commands 'path = r'/mnt/1/005_t2_haste_fs_tra_p2_320.nii.gz' a=LoadImage(reader='nibabelreader') img =a(path)'
Expected behavior
A clear and concise description of what you expected to happen.
Screenshots
If applicable, add screenshots to help explain your problem.
Environment
Ensuring you use the relevant python executable, please paste the output of:
python -c "import monai; monai.config.print_debug_info()"
Additional context
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