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- FROM condaforge/mambaforge :latest
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+ FROM condaforge/miniforge3 :latest
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LABEL io.github.snakemake.containerized="true"
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- LABEL io.github.snakemake.conda_env_hash="6aa289536136aae2d34bac6dce9ce47d037da888ed09e2c8ada989c90ef10658 "
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+ LABEL io.github.snakemake.conda_env_hash="c1edb6a4917211d511a661c54768e671f7f067b1ea473011e8fdcbc485178d2c "
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- # Step 1 : Retrieve conda environments
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+ # Step 2 : Retrieve conda environments
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# Conda environment:
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# source: workflow/envs/graphviz.yml
@@ -17,7 +17,7 @@ COPY workflow/envs/graphviz.yml /conda-envs/b42323b0ffd5d034544511c9db1bdead/env
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# Conda environment:
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# source: workflow/envs/mikropml.yml
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- # prefix: /conda-envs/3f83a46ff5ea715a12fde6ee46136b0b
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+ # prefix: /conda-envs/e7c23e20e8aab7662ae81be2ad57d998
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# name: mikropml
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# channels:
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# - conda-forge
@@ -30,15 +30,15 @@ COPY workflow/envs/graphviz.yml /conda-envs/b42323b0ffd5d034544511c9db1bdead/env
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# - r-future
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# - r-future.apply
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# - r-import
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- # - r-mikropml>=1.5 .0
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+ # - r-mikropml>=1.6 .0
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# - r-patchwork
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# - r-rmarkdown
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# - r-rpart
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# - r-purrr
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# - r-schtools>=0.4.0
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# - r-tidyverse
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- RUN mkdir -p /conda-envs/3f83a46ff5ea715a12fde6ee46136b0b
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- COPY workflow/envs/mikropml.yml /conda-envs/3f83a46ff5ea715a12fde6ee46136b0b /environment.yaml
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+ RUN mkdir -p /conda-envs/e7c23e20e8aab7662ae81be2ad57d998
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+ COPY workflow/envs/mikropml.yml /conda-envs/e7c23e20e8aab7662ae81be2ad57d998 /environment.yaml
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# Conda environment:
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# source: workflow/envs/smk.yml
@@ -54,9 +54,9 @@ COPY workflow/envs/mikropml.yml /conda-envs/3f83a46ff5ea715a12fde6ee46136b0b/env
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RUN mkdir -p /conda-envs/457b7b75191d44b96e5086432876e333
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COPY workflow/envs/smk.yml /conda-envs/457b7b75191d44b96e5086432876e333/environment.yaml
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- # Step 2 : Generate conda environments
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+ # Step 3 : Generate conda environments
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- RUN mamba env create --prefix /conda-envs/b42323b0ffd5d034544511c9db1bdead --file /conda-envs/b42323b0ffd5d034544511c9db1bdead/environment.yaml && \
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- mamba env create --prefix /conda-envs/3f83a46ff5ea715a12fde6ee46136b0b --file /conda-envs/3f83a46ff5ea715a12fde6ee46136b0b /environment.yaml && \
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- mamba env create --prefix /conda-envs/457b7b75191d44b96e5086432876e333 --file /conda-envs/457b7b75191d44b96e5086432876e333/environment.yaml && \
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- mamba clean --all -y
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+ RUN conda env create --prefix /conda-envs/b42323b0ffd5d034544511c9db1bdead --file /conda-envs/b42323b0ffd5d034544511c9db1bdead/environment.yaml && \
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+ conda env create --prefix /conda-envs/e7c23e20e8aab7662ae81be2ad57d998 --file /conda-envs/e7c23e20e8aab7662ae81be2ad57d998 /environment.yaml && \
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+ conda env create --prefix /conda-envs/457b7b75191d44b96e5086432876e333 --file /conda-envs/457b7b75191d44b96e5086432876e333/environment.yaml && \
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+ conda clean --all -y
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