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update all Linux images: musllinux_1_2, manylinux_2_28 + fix musllinux segfaults #272

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Merged
alexlancaster merged 33 commits into from
Mar 27, 2025
Merged

update all Linux images: musllinux_1_2, manylinux_2_28 + fix musllinux segfaults #272

alexlancaster merged 33 commits into from
Mar 27, 2025

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@alexlancaster alexlancaster commented Mar 27, 2025 •
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@alexlancaster
use manylinux_2_28 as the default image
f3389cd 
testing as this will be the new default starting with `cibuildwheel` 3.0
@alexlancaster
fix image syntax
f1cc34f
@alexlancaster
add comment
bc1588c
@alexlancaster
bump x86_64 back to musllinux_1_2: see which Python versions break
de9afe9
@alexlancaster
use musllinux_1_1 on all x86_64 except for cp313
dd0778f
@alexlancaster
skip cp313-musllinux_x86_64 no wheels for musllinux_1_1
ca26b9e 
* also, `musllinux_1_2` builds segfault
@alexlancaster
skip some tests on musllinux/86_64 avoid segfaults
79c0d72
@alexlancaster
use musllinux_1_2 on x86_64 as well to test
1a3b753
@alexlancaster
add debugging for skip tests
8238aa9
@alexlancaster
improve musllinux detection and debugging
8cbbfec
@alexlancaster
skip test_ManyOptions on musllinux x86
5fc07f3
@alexlancaster
skip all emhaplofreq tests on musslinux on X86
616e325
@alexlancaster
skip more emhaplofreq tests on musllinux
4f19ce4
@alexlancaster
re-enable cp313 on musllinux for x86
0e7e2e2
@alexlancaster
cleanup pyproject.toml
27d6f00 
* less verbose pytest
@alexlancaster
changes to eliminate warnings from SWIG wrapper
84acf62
@alexlancaster
add an x86_64 platform for musllinux wheel
7f4adb8
@alexlancaster
syntax fix
7c4bac3
@alexlancaster
reenable a test for checking
9f7a556
@alexlancaster
debugging GCC flags for emhaplofreq
624f2ce
@alexlancaster
more verbose pytest output
9f0c0b9
@alexlancaster
found source of musllinux crash
8b822a4 
* off-by-1 memory allocation for `like_ratio` array
@alexlancaster
disable musllinux skips globally
13d5503
@alexlancaster
some more debugging
c2e499a
@alexlancaster
always set default numPermutations to 1
a2daee0 
* even when no permutation test is to be run, this is used to allocate
  the initial array
@alexlancaster
make minimum permutation allocate be 2
ed53397
@alexlancaster
remove -g and --O0 from CFLAGS
443ecd6
@alexlancaster
tidy: remove printf, allow minimum array size to be 1
ce0516b
@alexlancaster
tidy up pytest command, switch off verbose
e202a00
@alexlancaster
tidy Haplo code
2a87442
@alexlancaster alexlancaster added bug Something isn't working, should not be used for new features: use "enhancement" for those enhancement New feature or request dependencies Pull requests that update a dependency file labels Mar 27, 2025
@alexlancaster alexlancaster self-assigned this Mar 27, 2025
@alexlancaster alexlancaster removed the bug Something isn't working, should not be used for new features: use "enhancement" for those label Mar 27, 2025
@alexlancaster alexlancaster changed the title update all Linux images: musllinux_1_2 and manylinux_2_28 update all Linux images: musllinux_1_2, manylinux_2_28 + fix musllinux segfaults Mar 27, 2025
@alexlancaster alexlancaster added bug Something isn't working, should not be used for new features: use "enhancement" for those and removed enhancement New feature or request labels Mar 27, 2025
@alexlancaster alexlancaster merged commit 14bbc07 into main Mar 27, 2025
89 checks passed
@alexlancaster alexlancaster deleted the manylinux_2_28 branch March 27, 2025 18:37
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