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Register paths with data manager in namespace serialization #169

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Register paths with data manager in namespace serialization #169

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15 changes: 15 additions & 0 deletions jupyter_workflow/streamflow/command.py
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Original file line number Diff line number Diff line change
Expand Up @@ -131,6 +131,12 @@ async def _deserialize_namespace(
dst_path = os.path.join(
mkdtemp(), path_processor.basename(namespace[name])
)

for location in self.step.workflow.context.scheduler.get_locations(job.name):
self.step.workflow.context.data_manager.register_path(
location=location,
path=namespace[name],
)
await asyncio.gather(
*(
asyncio.create_task(
Expand Down Expand Up @@ -208,6 +214,15 @@ async def _transfer_file(self, job: Job, path: str) -> str:
dst_connector = self.step.workflow.context.scheduler.get_connector(job.name)
path_processor = get_path_processor(dst_connector)
dst_path = path_processor.join(job.input_directory, os.path.basename(path))

src_loc = ExecutionLocation(deployment=LocalTarget.deployment_name, local=True, name="__LOCAL__")
self.step.workflow.context.data_manager.register_path(
location=src_loc,
path=path,
relpath=os.path.basename(path),
)


await self.step.workflow.context.data_manager.transfer_data(
src_location=ExecutionLocation(
deployment=LocalTarget.deployment_name, local=True, name="__LOCAL__"
Expand Down
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